View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_85 (Length: 266)
Name: NF3173_high_85
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_85 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 18599320 - 18599167
Alignment:
| Q |
79 |
tcgtcctcttacacctccattgtcgattttccagatatgtatttccggcgtcaatgagagattgagataaaattagaatcttgttgctggttgtttttat |
178 |
Q |
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| T |
18599320 |
tcgtcctcttacacctccattgtcgatttttcaaatctgtattttcggcgtcgatgagagattaagataaaattagaatcttgttgctggttgtttttat |
18599221 |
T |
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| Q |
179 |
gatccagatctgta-nnnnnnnnngctgatttatgatgttgtgttgtatgtgtt |
231 |
Q |
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| T |
18599220 |
gatccagatctgtattttttttttgctgatttatgatgttgtgttgtatgtgtt |
18599167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23267732 - 23267505
Alignment:
| Q |
1 |
tcctcctccgtcactattgtctctcttcctccgccctcattttcgacggcatcgttatctcgcannnnnnnnnnnnnatcgtcctcttacacctccattg |
100 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||| ||||| |||||||||||||||||||||| |
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| T |
23267732 |
tcctcctccgtcactgttgtctctcttcttccgccctcattttcgacggcgtcattatgtcgcactctctctcctcg-tcgtcctcttacacctccattg |
23267634 |
T |
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| Q |
101 |
tcgattttccagatatgtatttccggcgtcaatgagagattgagataaaattagaatcttgttgctggttgtttttatgatccagatctgtannnnnnnn |
200 |
Q |
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|||||| | ||||| ||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |
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| T |
23267633 |
tcgattcttcagatctgtattttcggcgccgatgagagattgagataaaattagaatattgttgctggttgtttttatggtccagatctata--tttttt |
23267536 |
T |
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| Q |
201 |
ngctgatttatgatgttgtgttgtatgtgtt |
231 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
23267535 |
tgctgatttaagatgttgtgttgtatgtgtt |
23267505 |
T |
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