View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_91 (Length: 252)
Name: NF3173_high_91
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_91 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4845836 - 4845764
Alignment:
| Q |
1 |
tatatttgtctttgtatccatcaatttgggctctctaagatagtctcaaatattgattaatactatgaaagtg |
73 |
Q |
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| T |
4845836 |
tatatttgtctttgtatccatcaatttggtctctctaagataatctcagatactgattaatactatgaaagtg |
4845764 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5193449 - 5193521
Alignment:
| Q |
1 |
tatatttgtctttgtatccatcaatttgggctctctaagatagtctcaaatattgattaatactatgaaagtg |
73 |
Q |
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| T |
5193449 |
tatatttgtcgttgtatccatcaatttggtctctctaagatagtctcagatactaattaaaactatgaaagtg |
5193521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 5170870 - 5170907
Alignment:
| Q |
36 |
taagatagtctcaaatattgattaatactatgaaagtg |
73 |
Q |
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||||||||||||| ||||||||| |||||||||||||| |
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| T |
5170870 |
taagatagtctcagatattgattgatactatgaaagtg |
5170907 |
T |
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