View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_high_93 (Length: 251)
Name: NF3173_high_93
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_high_93 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 21534947 - 21535169
Alignment:
| Q |
13 |
tgagattgtttataaatttataagcctaataattgattttcataatcattatattttgatcggaaaagattagggtagttttatggcgttttttaatatt |
112 |
Q |
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| T |
21534947 |
tgagattgtttataaatttataagcctaataattgattttcataatcattatattttgatcgggaaagattagggtagttttatggcgttttttaatatt |
21535046 |
T |
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| Q |
113 |
gagattattttttgaagggtttaatattgagattattaaaatctaaattttactttgattagaagatcaagtattgttcaattcgtgaggattgaaaaaa |
212 |
Q |
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| T |
21535047 |
gagattattttttgaagggtttaatattgagattattaaaatctaaattttactttgattagaagatcaagtattgttcaattcgtgatgattgaaaaaa |
21535146 |
T |
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| Q |
213 |
ttatctatcattcgtcttaaatt |
235 |
Q |
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| T |
21535147 |
ttatctatcattcgtcttaaatt |
21535169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 21519460 - 21519559
Alignment:
| Q |
135 |
aatattgagattattaaaatctaaattttactttgattagaagatcaagtattgttcaattcgtgaggattgaaaaaattatctatcattcgtcttaaat |
234 |
Q |
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| T |
21519460 |
aatattgagattattaaaatctaaattttactttgattagaagataaaatgttgttcaattcgtgagga-tgaaaagattatctatcattcctcttaaat |
21519558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 21519374 - 21519474
Alignment:
| Q |
21 |
tttataaatttataagcctaataattgattttcataatcattatattttgatcggaaaagattagggtagttttatggcgttttttaatattgagattat |
120 |
Q |
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||||||||||||||||||| | |||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
21519374 |
tttataaatttataagcctgacaattgattttcagaatcattatattttaatcgggaaagattagggtagtttcctggcgtttttcaatattgagattat |
21519473 |
T |
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| Q |
121 |
t |
121 |
Q |
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| T |
21519474 |
t |
21519474 |
T |
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