View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_10 (Length: 598)
Name: NF3173_low_10
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 10 - 581
Target Start/End: Original strand, 31734716 - 31735289
Alignment:
| Q |
10 |
attattctagtactctttaagaatagcacccaaaggtgtgggtgctcttaaattattctagtactctaagaatatattggaaagtcactatttacgttga |
109 |
Q |
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| T |
31734716 |
attattctggtactctttaagaatagcacccaaaggtgtgggtgctcttaaattattctagtactctaagaatatattggaaagtcactatttacgttga |
31734815 |
T |
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| Q |
110 |
ttctttgaatcatgttacgcaggaagtcaatcaataatgcagatgaagactactcaagctgcacttgtgtatactttttatttttatgtacctcattaaa |
209 |
Q |
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| T |
31734816 |
ttctttgaatcatgttacacaggaattcaatcaataatgcagatgaagactactcaagctgcacttgtgtatactttttatttttatgtacctcattaaa |
31734915 |
T |
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| Q |
210 |
tttgtttcatttgagaaagagaaaatttggataatagaaaattataagtatgagttgaaatcctctttactttatgaacaaaatgaatatctttgttact |
309 |
Q |
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| T |
31734916 |
tttgtttcatttgagaaagagaaaatttggataatagaaaattataagtatgagttgaaatcctctttactttatgaacaaaatgaatatctttgttact |
31735015 |
T |
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| Q |
310 |
acgattttggtgtataaaaacctaattaatgtcatcgattttggttcaataacgatttgatcttgatcaatttcaacaaagcataatttcttaattgaga |
409 |
Q |
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| T |
31735016 |
acgattttggtgtataaaaacctaattaatgtcatcgattttggttcaataacgatttgatcttgatcaatttcaacaaagcataatttcttaattgaga |
31735115 |
T |
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| Q |
410 |
gagtacacacattggtgattggtttgatcgttttttataatttgaagctaaggtggaaatttatgaagaatatctcacaaattagtttcagctgatctcc |
509 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31735116 |
gagtacacacattggtgattggtttaatcgttttttataatttgaagctaaggtggaaatttatgaagaatatctcacaaattggtttcagctgatctcc |
31735215 |
T |
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| Q |
510 |
ttaattttaggttatttt--tctgtctttgggtttaggagatacaaagtgtgtgagtcttttttaattaaaaat |
581 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31735216 |
ttaattttaggttatttttctctgtctttggatttaggagatacaaagtgtgtgagtcttttttaattaaaaat |
31735289 |
T |
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