View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_100 (Length: 250)
Name: NF3173_low_100
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 33011520 - 33011282
Alignment:
| Q |
11 |
cagagactccacgccggcatcgttaccggcgactgaactggtacttccagatccctaaatccttctgaacacagtgttctttgtatagttgatcctattg |
110 |
Q |
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| T |
33011520 |
cagagactccacgccggcatcgttaccggcgactgaactggtacttccagatccctaaatccttctgaacacagtgttctttgtatagttgatcctattc |
33011421 |
T |
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| Q |
111 |
atctcgcgattcgcttcattctcataattctcattttttgcagaaggtaataacaagatgataagcgcagtgcttgtgatgaacacacaagggaagcctc |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33011420 |
atctcgcgattcgcttcattttcataattctcattttttgcagaagttaataacaagatgataagcgcagtgcttgtgatgaacacacaagggaagcctc |
33011321 |
T |
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| Q |
211 |
gtctcgctaaattctacgaatttcgggtccatttctctt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33011320 |
gtctcgctaaattctacgaatttcgggtccatttctctt |
33011282 |
T |
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