View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_101 (Length: 250)
Name: NF3173_low_101
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_101 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 54097319 - 54097237
Alignment:
| Q |
158 |
tgaatcgaaagtcaaagaaatatataattacatgaaaacgaagaaagcacttggaggtctcttaggcttgttagggtcctttg |
240 |
Q |
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| T |
54097319 |
tgaatcgaaagtcaaagaaatatataattacatgaaaacgaagaaagcacttggaggtctcttaggcttgttagggtcctttg |
54097237 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 54097633 - 54097570
Alignment:
| Q |
1 |
tcaaacatatttcatatactccataatttttcgtgttcatataataataatatcattctacata |
64 |
Q |
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| T |
54097633 |
tcaaacatatttcaaatactccataatttttcgtgttcatataataataatatcattctacata |
54097570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 54097426 - 54097388
Alignment:
| Q |
50 |
atatcattctacatattcaattataataattggacagtc |
88 |
Q |
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| T |
54097426 |
atatcattctacatattcaattataataattggacagtc |
54097388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 9695056 - 9694998
Alignment:
| Q |
185 |
ttacatgaaaacgaagaaagcacttggaggtctcttaggcttgttagggtcctttgctt |
243 |
Q |
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| T |
9695056 |
ttacatgaaaacgaagaaagcacttggaggcctcttaggcttgttaggatccttagctt |
9694998 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 31115622 - 31115674
Alignment:
| Q |
186 |
tacatgaaaacgaagaaagcacttggaggtctcttaggcttgttagggtcctt |
238 |
Q |
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| T |
31115622 |
tacatgaaaacgaagaaagcacttggaggcctctttggcttgttaggatcctt |
31115674 |
T |
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Target: scaffold0405 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 15461 - 15508
Alignment:
| Q |
185 |
ttacatgaaaacgaagaaagcacttggaggtctcttaggcttgttagg |
232 |
Q |
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| T |
15461 |
ttacatgaaaacgaagaaagcacttggagacctcttaggcttgttagg |
15508 |
T |
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