View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_104 (Length: 249)
Name: NF3173_low_104
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40000332 - 40000098
Alignment:
| Q |
1 |
tgatagaagtgagtaatttcattgaacaaagtgcatataatacaatctgtaccagaaccagacttatgactaaatcaaatgagatacaacagaaagatac |
100 |
Q |
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| T |
40000332 |
tgatagaagtgagtaatttcattgaacaaagtgcatataatacaatctgtaccagaaccagacttatgactaaatcaaatgagatacaacagaaagatac |
40000233 |
T |
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| Q |
101 |
acattattctatgactaacagaatgcgtcgcggctgaaaacaac-ttcatctcttagtttatttctccattttcttgatacactccgcgcctcatcgata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40000232 |
acattattctatgactaacagaatgcgtcgcggctgaaaacaactttcatctcttagtttatttctccattttcttgatacactccgcgcctcatcgata |
40000133 |
T |
|
| Q |
200 |
ctcaggtgttgatgtgtattagttgctgatgtaac |
234 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40000132 |
ctcaggtgttgatgtgtattagttgctgatgtaac |
40000098 |
T |
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