View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_11 (Length: 596)

Name: NF3173_low_11
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_11
NF3173_low_11
[»] chr7 (20 HSPs)
chr7 (370-591)||(1907113-1907334)
chr7 (322-548)||(8595525-8595748)
chr7 (269-372)||(1907495-1907598)
chr7 (143-218)||(1907649-1907724)
chr7 (1-87)||(1908351-1908440)
chr7 (339-527)||(8826030-8826217)
chr7 (323-434)||(18070075-18070184)
chr7 (323-397)||(15889623-15889696)
chr7 (21-63)||(15890300-15890342)
chr7 (150-217)||(27053554-27053622)
chr7 (141-217)||(41188847-41188924)
chr7 (145-218)||(16082492-16082566)
chr7 (141-218)||(32204153-32204231)
chr7 (168-214)||(42552535-42552581)
chr7 (172-217)||(31626102-31626147)
chr7 (139-218)||(6548499-6548579)
chr7 (169-217)||(8258699-8258747)
chr7 (150-217)||(8380421-8380489)
chr7 (150-217)||(42222201-42222269)
chr7 (150-213)||(49069535-49069599)
[»] chr3 (21 HSPs)
chr3 (316-587)||(3276548-3276815)
chr3 (322-433)||(39924739-39924849)
chr3 (316-402)||(5027806-5027891)
chr3 (316-405)||(3273318-3273405)
chr3 (151-218)||(45899604-45899672)
chr3 (144-218)||(11675287-11675362)
chr3 (145-218)||(34060826-34060900)
chr3 (150-217)||(32415549-32415617)
chr3 (21-55)||(3274049-3274083)
chr3 (21-55)||(3277459-3277493)
chr3 (143-216)||(21324489-21324563)
chr3 (177-218)||(18847-18888)
chr3 (177-218)||(18988-19029)
chr3 (21-54)||(5027258-5027291)
chr3 (21-58)||(39925416-39925453)
chr3 (168-213)||(52570781-52570826)
chr3 (150-217)||(8847513-8847581)
chr3 (150-217)||(12051018-12051086)
chr3 (150-217)||(36730214-36730282)
chr3 (173-217)||(37509115-37509159)
chr3 (150-217)||(46317466-46317534)
[»] scaffold0303 (2 HSPs)
scaffold0303 (316-587)||(20231-20499)
scaffold0303 (21-54)||(21014-21047)
[»] scaffold0004 (2 HSPs)
scaffold0004 (322-584)||(113659-113918)
scaffold0004 (323-434)||(354648-354758)
[»] chr6 (7 HSPs)
chr6 (316-587)||(14860427-14860695)
chr6 (322-401)||(12351423-12351501)
chr6 (319-433)||(18675800-18675912)
chr6 (21-58)||(12352328-12352365)
chr6 (144-218)||(31220387-31220462)
chr6 (141-217)||(6507450-6507527)
chr6 (150-217)||(16437643-16437711)
[»] scaffold0047 (1 HSPs)
scaffold0047 (322-435)||(8295-8407)
[»] chr5 (13 HSPs)
chr5 (322-434)||(14405486-14405597)
chr5 (150-217)||(12914155-12914223)
chr5 (21-58)||(40666243-40666280)
chr5 (319-372)||(40667332-40667384)
chr5 (170-217)||(338825-338872)
chr5 (170-217)||(39567904-39567951)
chr5 (170-217)||(43414125-43414172)
chr5 (165-215)||(16899635-16899685)
chr5 (21-58)||(14404882-14404919)
chr5 (169-218)||(39335473-39335522)
chr5 (143-218)||(19894791-19894867)
chr5 (150-217)||(35653316-35653384)
chr5 (150-217)||(39167576-39167644)
[»] chr1 (17 HSPs)
chr1 (316-434)||(16850451-16850567)
chr1 (330-402)||(21197541-21197612)
chr1 (144-217)||(40920159-40920233)
chr1 (138-218)||(51424125-51424206)
chr1 (170-217)||(41147536-41147583)
chr1 (21-55)||(16851210-16851244)
chr1 (145-218)||(17402923-17402997)
chr1 (171-217)||(40845253-40845299)
chr1 (150-218)||(14331817-14331886)
chr1 (21-58)||(21198241-21198278)
chr1 (141-217)||(22346295-22346372)
chr1 (150-218)||(44359729-44359798)
chr1 (180-217)||(46296243-46296280)
chr1 (150-217)||(11385961-11386029)
chr1 (150-217)||(28277540-28277608)
chr1 (150-217)||(43433755-43433823)
chr1 (173-217)||(50295491-50295535)
[»] chr4 (17 HSPs)
chr4 (128-218)||(52341558-52341650)
chr4 (145-218)||(35675250-35675324)
chr4 (145-216)||(39158388-39158460)
chr4 (144-218)||(966556-966631)
chr4 (141-217)||(23765549-23765626)
chr4 (150-217)||(30475405-30475473)
chr4 (139-218)||(30617918-30617998)
chr4 (150-217)||(34316784-34316852)
chr4 (170-217)||(19328989-19329036)
chr4 (170-217)||(31754939-31754986)
chr4 (138-199)||(29462769-29462831)
chr4 (150-218)||(15986246-15986315)
chr4 (141-217)||(35808457-35808534)
chr4 (141-217)||(40436052-40436129)
chr4 (170-218)||(34016626-34016674)
chr4 (22-54)||(37439615-37439647)
chr4 (150-217)||(50514674-50514742)
[»] scaffold0031 (2 HSPs)
scaffold0031 (319-402)||(90036-90117)
scaffold0031 (21-55)||(89420-89454)
[»] scaffold0097 (2 HSPs)
scaffold0097 (322-402)||(32027-32106)
scaffold0097 (21-63)||(31080-31122)
[»] scaffold0882 (1 HSPs)
scaffold0882 (322-433)||(1164-1273)
[»] scaffold0766 (1 HSPs)
scaffold0766 (322-433)||(2130-2239)
[»] chr8 (7 HSPs)
chr8 (145-209)||(5300198-5300263)
chr8 (150-217)||(45337984-45338052)
chr8 (170-217)||(25249402-25249449)
chr8 (168-215)||(30351590-30351637)
chr8 (169-218)||(37922989-37923038)
chr8 (150-217)||(10694787-10694855)
chr8 (150-217)||(19389371-19389439)
[»] chr2 (10 HSPs)
chr2 (136-218)||(11659228-11659311)
chr2 (144-218)||(2239556-2239631)
chr2 (21-63)||(20727251-20727293)
chr2 (148-197)||(41890192-41890242)
chr2 (138-218)||(2136404-2136485)
chr2 (324-433)||(4183332-4183440)
chr2 (177-218)||(12695298-12695339)
chr2 (150-217)||(6999182-6999250)
chr2 (150-217)||(11445380-11445448)
chr2 (169-217)||(27495123-27495171)
[»] scaffold0062 (3 HSPs)
scaffold0062 (150-213)||(16836-16900)
scaffold0062 (150-213)||(27004-27068)
scaffold0062 (150-213)||(37170-37234)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 370 - 591
Target Start/End: Complemental strand, 1907334 - 1907113
Alignment:
Q  370 cttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattctctctcctttttgatgatgacaaacaactcatg 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1907334 cttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattctctcccctttttgatgatgacaaacaactcatg 1907235  T
Q  470 gagggatttgctcaatgaagaggttagaccaataataatcaaatactaaaatatatgatagagataagcgcaaatttagttcctcctcgccatatgcaaa 569  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  1907234 gagggatttgctcaatgaagaggttagaccaataatactcaaatactaaaatatatgatagagataagcgcaaatttagttcctcctcactatatgcaaa 1907135  T
Q  570 caatgaaaatccactccctttg 591  Q
    ||||||||||||||||||||||    
T  1907134 caatgaaaatccactccctttg 1907113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 322 - 548
Target Start/End: Original strand, 8595525 - 8595748
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||||||||||||| |   ||||  |  ||||     
T  8595525 caagacttgaaggcttgaatcttcttttccgctttttgcatttttgatcttctaggacttctttt-gtcaatcatcaaaaccattctattcatgtcaagg 8595623  T
Q  422 catatatgcacattctctctcctttttgatgatgacaaacaactcatggagggatttgctcaatgaagaggttagaccaataataatcaaatactaaaat 521  Q
    || |||| ||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||| ||||||||||| |||| ||||||    
T  8595624 cagatattcacattctc-cacctttttgatgatgacaaacatctcatagagggatttgctcaatgaaagggttagatcaataataatc-aataataaaat 8595721  T
Q  522 atatgatagagataagcgcaaatttag 548  Q
    |||||| ||||||||||||| ||||||    
T  8595722 atatgacagagataagcgcagatttag 8595748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 269 - 372
Target Start/End: Complemental strand, 1907598 - 1907495
Alignment:
Q  269 ccaatgcctcaagagcactctttaacatttccgataaaaataataacaaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgt 368  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1907598 ccaatgtctcaagagcactctttagcatttccgataaaaataataacaaaactcaggacttgaaagcttgaatcttcttttccactttttgcattgttgt 1907499  T
Q  369 tctt 372  Q
    ||||    
T  1907498 tctt 1907495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 1907724 - 1907649
Alignment:
Q  143 gacacttgttaaggaaaccaaatgtatatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1907724 gacacttgttaaggaaaccaaatgtatatgtttgcattgcattcaacaatattttgattattaaaaaattaaattc 1907649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1908440 - 1908351
Alignment:
Q  1 atactattgaactatgtagtataaatta---gcaagtataaaaataatgagagtgatgaaataataagttttggcaatgtttgagtgcaa 87  Q
    ||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1908440 atactattgaactatgtagtataaattattagcaagtgtaaaaataatgagagtgatgaaataataagttttggcaatgtttgagtgcaa 1908351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 339 - 527
Target Start/End: Complemental strand, 8826217 - 8826030
Alignment:
Q  339 aatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattctc 438  Q
    |||||||||||| |||||||||||| || ||||| ||| ||||| ||||||||||||||||||| ||  |||| ||  |||| ||||||| ||||||| |    
T  8826217 aatcttcttttctactttttgcattatttttcttctagcacttc-ttttgtcaatcatcaaaaccaatgtattcctgtcaaggcatatattcacattccc 8826119  T
Q  439 tc--tcctttttgatgatgacaaacaactcatggagggatttgctcaatgaagaggttagaccaataataatcaaatactaaaatatatga 527  Q
     |   ||  ||||||||||||||||| ||||| |||||||||||| ||||||  ||||||  |||||||| ||  ||| ||||||||||||    
T  8826118 cccgccccctttgatgatgacaaacatctcatagagggatttgcttaatgaatgggttagtacaataatattc--ataataaaatatatga 8826030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 18070075 - 18070184
Alignment:
Q  323 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagac 422  Q
    ||||||||| ||||||||| ||||||||| | |||| |||  |||||||| ||||||||||||| ||||||||||||||| ||| |||| ||  |||| |    
T  18070075 aagacttgatagcttgaat-ttcttttccgccttttacatctttgttcttctaggacttctttt-gtcaatcatcaaaaccaaagtattcctatcaaggc 18070172  T
Q  423 atatatgcacat 434  Q
    |||||| |||||    
T  18070173 atatattcacat 18070184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 15889696 - 15889623
Alignment:
Q  323 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatc 397  Q
    |||||| |||||| ||||||||||||||| ||||||||||  |||||| | ||||||||| ||||||||||||||    
T  15889696 aagactagaaagcctgaatcttcttttccgctttttgcatctttgttcatctaggacttc-ttttgtcaatcatc 15889623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 15890342 - 15890300
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaataata 63  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  15890342 ataaattagcaagtgtaaaaataatgagagtgatgaaataata 15890300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 27053622 - 27053554
Alignment:
Q  150 gttaaggaaaccaaatgtata-tgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||| ||| | |||||||||||  |||||||||||||||| | |||||||||||||||    
T  27053622 gttaaggaaaccaaaagtagaatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 27053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 41188924 - 41188847
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| | ||||||||| ||||||||| |||||||||||||  |||||||  ||||||| | |||||||||||||||    
T  41188924 aggacaatggttaaggaagccaaatgtagtatgtttgcattgatttcaacagcattttgacttttaaaaagttaaatt 41188847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 16082566 - 16082492
Alignment:
Q  145 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||||||||  || | | |||||| |||||||||    
T  16082566 cacttgttaaggaatccaaaagtagtatgtttgcattggattcaacaataacttaacttttaaaacgttaaattc 16082492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 32204153 - 32204231
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||||||||||| ||||  || ||  ||||||||| |||||| |||||||| | | ||||||||||||||||    
T  32204153 aggacacttgttaaggaaatcaaagatagtaaatttgcattgtattcaaaaatattttaacttttaaaaagttaaattc 32204231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 42552581 - 42552535
Alignment:
Q  168 atatgtttgcattgcattcaacaatattttgattattaaaaagttaa 214  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  42552581 atatgtttgcattgaatttaacaatattttgacttttaaaaagttaa 42552535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 31626147 - 31626102
Alignment:
Q  172 gtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||  |||||||| ||||||||| |||||||||||||||    
T  31626147 gtttgcattggtttcaacaacattttgatttttaaaaagttaaatt 31626102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 6548499 - 6548579
Alignment:
Q  139 ttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||| |||||||||| | || |||| ||| || |||||||||| || |||||||||||| | | ||||||||||||||||    
T  6548499 ttagggcacttgttaaaggaatcaaaagtagtaagtttgcattggatccaacaatattttaacttttaaaaagttaaattc 6548579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 8258747 - 8258699
Alignment:
Q  169 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||||||  |||||||| ||| ||| |||||||||||||||||    
T  8258747 tatgtttgcattggtttcaacaaaattatgactattaaaaagttaaatt 8258699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 8380421 - 8380489
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| ||| ||||||| |||||  |||||||| ||||||| | |||||||||||||||    
T  8380421 gttaaggaagccaaaagtagtatgttttcattggtttcaacaacattttgacttttaaaaagttaaatt 8380489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 42222201 - 42222269
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||| ||| |||  ||||||| ||||  |||||||||||||||| | |||||||||||||||    
T  42222201 gttaaggaaactaaaagtaacatgtttgtattggtttcaacaatattttgacttttaaaaagttaaatt 42222269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 49069535 - 49069599
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 213  Q
    ||||||||||||||| |||  ||||||| ||||  ||||||||||| |||||| |||||||||||    
T  49069535 gttaaggaaaccaaaagtaacatgtttgtattggtttcaacaatatattgatttttaaaaagtta 49069599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 316 - 587
Target Start/End: Complemental strand, 3276815 - 3276548
Alignment:
Q  316 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctc 415  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||  |||| ||     
T  3276815 aaaacccaagacttgataacttgaat-ttcttttccgctttttgcattgttgctcttctaggacttctttt-gtcaatcatcaaaactaatgtattcctg 3276718  T
Q  416 gcaagacatatatgcacattctctctcctttttgatgatgacaaacaactcatggagggatttgctcaatgaagaggttagaccaataataatcaaatac 515  Q
     |||| ||||||| ||||||||| | ||||||||||||||||||||| ||| ||||| |||||||||||||||  ||||||| ||||||||||| ||||     
T  3276717 tcaaggcatatattcacattctccc-cctttttgatgatgacaaacatctcttggagtgatttgctcaatgaaagggttagatcaataataatc-aataa 3276620  T
Q  516 taaaatatatgatagagataagcgcaaatttagttcctcctcgccatatgcaaacaatgaaaatccactccc 587  Q
    |||||||||||| ||||||| ||||| | || | ||| |||| | ||||||||||||| |||||||||||||    
T  3276619 taaaatatatgacagagatatgcgcagaatttgctccccctcactatatgcaaacaattaaaatccactccc 3276548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 322 - 433
Target Start/End: Complemental strand, 39924849 - 39924739
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||| ||  ||||     
T  39924849 caagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 39924751  T
Q  422 catatatgcaca 433  Q
    ||||||| ||||    
T  39924750 catatattcaca 39924739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 316 - 402
Target Start/End: Original strand, 5027806 - 5027891
Alignment:
Q  316 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 402  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  5027806 aaaattcaagactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 5027891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 316 - 405
Target Start/End: Complemental strand, 3273405 - 3273318
Alignment:
Q  316 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaa 405  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| | || ||||||||| ||||||||||||||||||||||    
T  3273405 aaaacccaagacttgataacttgaat-ttcttttcctctttttgcattgttgcttttctaggacttc-ttttgtcaatcatcaaaactaa 3273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 45899672 - 45899604
Alignment:
Q  151 ttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||||| ||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||||||    
T  45899672 ttaaggaaaccaaaagtagtatgtttacattgaattcaacaatattttgacttttaaaaatttaaattc 45899604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 11675287 - 11675362
Alignment:
Q  144 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||||||||||||| ||  || ||| |||||| |||||||||||||||||   ||||||||||||||||    
T  11675287 acacttgttaaggaaaccaaaagtggtaggttagcattggattcaacaatattttgacatttaaaaagttaaattc 11675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 34060900 - 34060826
Alignment:
Q  145 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||||||  ||| ||| | ||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  34060900 cacttgttaaggaaattaaaagtagtttgtttgcattgaattcaacaatattttaacttttaaaaagttaaattc 34060826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 32415549 - 32415617
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  32415549 gttaaggaaaccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 32415617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 3274083 - 3274049
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  3274083 ataaattagcaagtgtaaaaataatgagagtgatg 3274049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 3277493 - 3277459
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  3277493 ataaattagcaagtgtaaaaataatgagagtgatg 3277459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 21324489 - 21324563
Alignment:
Q  143 gacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaat 216  Q
    |||||||||||| ||||| ||| ||| |||| |||||| | ||||||||||||||| | | ||||||||||||||    
T  21324489 gacacttgttaaagaaactaaaagtaatatgattgcatcggattcaacaatattttaacttttaaaaagttaaat 21324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 18888 - 18847
Alignment:
Q  177 cattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||    
T  18888 cattggattcaacaatattttaatttttaaaaagttaaattc 18847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 19029 - 18988
Alignment:
Q  177 cattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||    
T  19029 cattggattcaacaatattttaatttttaaaaagttaaattc 18988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 5027258 - 5027291
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  5027258 ataaattagcaagtgtaaaaataatgagagtgat 5027291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 39925453 - 39925416
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaa 58  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  39925453 ataaattaacaagtgtaaaaataatgagagtgatgaaa 39925416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 52570781 - 52570826
Alignment:
Q  168 atatgtttgcattgcattcaacaatattttgattattaaaaagtta 213  Q
    ||||||||||||||  |||||||||||||||| | |||||||||||    
T  52570781 atatgtttgcattggtttcaacaatattttgacttttaaaaagtta 52570826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 8847581 - 8847513
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||| |||  |||||| |||||  |||||||||||||| | | |||||||||||||||    
T  8847581 gttaaggaaaccaaaagtagcatgtttacattgttttcaacaatattttaacttttaaaaagttaaatt 8847513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 12051018 - 12051086
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||| ||| |||||||||||||||    
T  12051018 gttaaggaagccaaaagtagcatgtttgcattgttttcaacaacattttaatttttaaaaagttaaatt 12051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 36730282 - 36730214
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  36730282 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 36730214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 37509115 - 37509159
Alignment:
Q  173 tttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||  |||||||||||||||| | |||||||||||||||    
T  37509115 tttgcattggtttcaacaatattttgacttttaaaaagttaaatt 37509159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 46317466 - 46317534
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  46317466 gttaaggaagccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 46317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 316 - 587
Target Start/End: Complemental strand, 20499 - 20231
Alignment:
Q  316 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctc 415  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||| |   |||  ||     
T  20499 aaaattcaagactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttctttt-gtcaatcatcaaaaccatcgtatc-ctg 20402  T
Q  416 gcaagacatatatgcacattctctctcctttttgatgatgacaaacaactcatggagggatttgctcaatgaagaggttagaccaataataatcaaatac 515  Q
     |||| |||||||  |||||||| | ||||||||||||||||||||| ||| ||||| |||||||||||||||  || |||| ||||||||||||||||     
T  20401 tcaaggcatatattgacattctccc-cctttttgatgatgacaaacatctcttggagtgatttgctcaatgaaaggggtagatcaataataatcaaataa 20303  T
Q  516 taaaatatatgatagagataagcgcaaatttagttcctcctcgccatatgcaaacaatgaaaatccactccc 587  Q
    |||||||||||| ||||||| ||||| |||| | ||| |||| | ||||||||||||| |||||||||||||    
T  20302 taaaatatatgacagagatatgcgcagattttgctccccctcactatatgcaaacaattaaaatccactccc 20231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 21047 - 21014
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  21047 ataaattagcaagtgtaaaaataatgagagtgat 21014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 322 - 584
Target Start/End: Original strand, 113659 - 113918
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||  ||||||||| |||||||||||| | || ||  ||||     
T  113659 caagactagaaagcttgaatcttcttttccgctttttgcatcgctgttcttctaggacttc-atttgtcaattatcaaaactaaagtgttcctgtcaagg 113757  T
Q  422 catatatgcacattctctctcctttttgatgatgacaaacaactcatggagggatttgctcaatgaagaggttagaccaataataatcaaatactaaaat 521  Q
    ||||||| ||||||||| | ||||||||||||||||||||| ||| || ||  |||| |||||| ||  ||||| | ||||||||||| |||| ||||||    
T  113758 catatattcacattctc-cccctttttgatgatgacaaacatctcttgaagtaattttctcaataaaagggttatatcaataataatc-aataataaaat 113855  T
Q  522 atatgatagagataagcgcaaatttagttcctcctcgccatatgcaaacaatgaaaatccact 584  Q
    |||||| ||||||||||||| |||| | ||| |||| | ||||||||||||| ||||||||||    
T  113856 atatgacagagataagcgcagattttgctccccctcactatatgcaaacaattaaaatccact 113918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 354648 - 354758
Alignment:
Q  323 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagac 422  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||| ||  |||| |    
T  354648 aagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaaggc 354746  T
Q  423 atatatgcacat 434  Q
    |||||| |||||    
T  354747 atatattcacat 354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 316 - 587
Target Start/End: Complemental strand, 14860695 - 14860427
Alignment:
Q  316 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttc-t 414  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||| | ||||||||| ||||||||||||| |||||||||||||||     |||  | |    
T  14860695 aaaactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttctttt-gtcaatcatcaaaaccgccgtatcccgt 14860598  T
Q  415 cgcaagacatatatgcacattctctctcctttttgatgatgacaaacaactcatggagggatttgctcaatgaagaggttagaccaataataatcaaata 514  Q
      |||| ||||||| ||||||||| | |||||||||||||||||||||  || ||||| |||||||||||||||  ||||| | ||||||||||| ||||    
T  14860597 atcaaggcatatattcacattctccc-cctttttgatgatgacaaacatttcttggagtgatttgctcaatgaaagggttatatcaataataatc-aata 14860500  T
Q  515 ctaaaatatatgatagagataagcgcaaatttagttcctcctcgccatatgcaaacaatgaaaatccactccc 587  Q
     |||||||||||  ||||||||||||| |||| | ||| |||| | ||||||||||| | ||| |||||||||    
T  14860499 ataaaatatatggcagagataagcgcagattttgctccccctcactatatgcaaacatttaaagtccactccc 14860427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 322 - 401
Target Start/End: Complemental strand, 12351501 - 12351423
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaa 401  Q
    |||||||||||||||| ||||||||||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||    
T  12351501 caagacttgaaagcttaaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaa 12351423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 319 - 433
Target Start/End: Complemental strand, 18675912 - 18675800
Alignment:
Q  319 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgca 418  Q
    |||||||| |||| ||||||||| ||||||||| |||||||||| |||| |||| ||||||||| ||||||| ||||||||||| ||| |||| ||  ||    
T  18675912 actcaagatttgatagcttgaat-ttcttttccgctttttgcatcgttgctcttctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtca 18675815  T
Q  419 agacatatatgcaca 433  Q
    || ||||||| ||||    
T  18675814 aggcatatattcaca 18675800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 12352365 - 12352328
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaa 58  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12352365 ataaattagcaagtgtaaaaataatgagagtgatgaaa 12352328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 31220462 - 31220387
Alignment:
Q  144 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||| |||||||||||||| ||| ||||||||||||  |||||| || ||||| | | ||||||||||||||||    
T  31220462 acacttattaaggaaaccaaaagtagtatgtttgcattttattcaataacattttaacttttaaaaagttaaattc 31220387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 6507527 - 6507450
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| | |||||||||| |||| ||| ||| | | ||||| |||||||||| |||||||| |||||||||||||||    
T  6507527 aggacaatggttaaggaaatcaaaagtagtatatatacattgaattcaacaatgttttgatttttaaaaagttaaatt 6507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 16437711 - 16437643
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||  |||  ||||||||||||  |||||||||||||| | | |||||||||||||||    
T  16437711 gttaaggaaaccaacagtagcatgtttgcattggtttcaacaatatttttacttttaaaaagttaaatt 16437643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 322 - 435
Target Start/End: Complemental strand, 8407 - 8295
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    |||||||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||| ||  ||||     
T  8407 caagacttgaaagcttgaatcttcttttcggctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 8309  T
Q  422 catatatgcacatt 435  Q
    ||||||| ||||||    
T  8308 catatattcacatt 8295  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 14405486 - 14405597
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    |||||||||||||||||||||||||||||| ||||||| ||  |||||||| ||||| ||| ||||||||||||||||||||||| |||| ||  ||||     
T  14405486 caagacttgaaagcttgaatcttcttttccgctttttgtatctttgttcttctaggatttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 14405584  T
Q  422 catatatgcacat 434  Q
    ||||||| |||||    
T  14405585 catatattcacat 14405597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 12914155 - 12914223
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| ||| |||||||||||||  |||||||||||||||||| ||||||| |||||||    
T  12914155 gttaaggaagccaaaagtagtatgtttgcattggtttcaacaatattttgatttttaaaaaattaaatt 12914223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 40666243 - 40666280
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaa 58  Q
    |||||||||||||| |||||||||||||||||||||||    
T  40666243 ataaattagcaagtgtaaaaataatgagagtgatgaaa 40666280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 40667332 - 40667384
Alignment:
Q  319 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttctt 372  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||    
T  40667332 actcaagacttgatagcttgaat-ttcttttccactttttgcatcattgttctt 40667384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 338872 - 338825
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||||   |||||||||||||||||| |||||||||||||||    
T  338872 atgtttgcatttgtttcaacaatattttgatttttaaaaagttaaatt 338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 39567904 - 39567951
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||  ||||||||| |||||||| |||||||||||||||    
T  39567904 atgtttgcattggtttcaacaatgttttgatttttaaaaagttaaatt 39567951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 43414172 - 43414125
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||  |||||||| ||||||||| |||||||||||||||    
T  43414172 atgtttgcattggtttcaacaacattttgatttttaaaaagttaaatt 43414125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 16899685 - 16899635
Alignment:
Q  165 tgtatatgtttgcattgcattcaacaatattttgattattaaaaagttaaa 215  Q
    |||||||||||| |||| ||||||||| ||||||| | |||||||||||||    
T  16899685 tgtatatgtttgtattggattcaacaacattttgacttttaaaaagttaaa 16899635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 14404882 - 14404919
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaa 58  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  14404882 ataaattaacaagtgtaaaaataatgagagtgatgaaa 14404919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 39335473 - 39335522
Alignment:
Q  169 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||| |||| ||||||||| ||||||| | ||||||||||||||||    
T  39335473 tatgtttgtattggattcaacaacattttgacttttaaaaagttaaattc 39335522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 19894791 - 19894867
Alignment:
Q  143 gacacttgttaaggaaaccaaatgtatatg-tttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||| |||||||||| |||| ||||| | |||| |||| ||| ||||||||||| | | ||||||||||||||||    
T  19894791 gacactcgttaaggaaatcaaaagtataaggtttgaattggatttaacaatattttaacttttaaaaagttaaattc 19894867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 35653384 - 35653316
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||||| | |||||||||||||    
T  35653384 gttaaggaagccaaaagtaccatgtttgcattggtttcaacaacattttgattttcaaaaagttaaatt 35653316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 39167576 - 39167644
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| |||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||||||||    
T  39167576 gttaagaaaaccaaaagtaatatatttacattgaatttaacaatgttttgatttttaaaaagttaaatt 39167644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 434
Target Start/End: Complemental strand, 16850567 - 16850451
Alignment:
Q  316 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctc 415  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||  |||| ||     
T  16850567 aaaacccaagacttgataacttgaat-ttcttttccgctttttgcattgttgctcttctaggacttc-ttttgtcaatcatcaaaactaatgtattcctg 16850470  T
Q  416 gcaagacatatatgcacat 434  Q
     |||| ||||||| |||||    
T  16850469 tcaaggcatatattcacat 16850451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 21197612 - 21197541
Alignment:
Q  330 gaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 402  Q
    |||||||||||| ||||||||| ||||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  21197612 gaaagcttgaatattcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaac 21197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 40920159 - 40920233
Alignment:
Q  144 acacttgttaaggaaaccaaatgtatatg-tttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||||||||| |||   | ||||||||| ||||||||||||||| | | |||||||||||||||    
T  40920159 acacttgttaaggaaaccaaaagtagtggatttgcattggattcaacaatattttaacttttaaaaagttaaatt 40920233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 51424125 - 51424206
Alignment:
Q  138 cttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||| |||||||||||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |   ||||||||||||||||    
T  51424125 cttatgacacttgttaaagaaaccaaaagtaatatgtttacattggattcaacaatgttttaacctttaaaaagttaaattc 51424206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 41147583 - 41147536
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  41147583 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 41147536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 16851244 - 16851210
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  16851244 ataaattagcaagtgtaaaaataatgagagtgatg 16851210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 17402923 - 17402997
Alignment:
Q  145 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||| |||||||| ||| ||  ||| ||||  ||||||||||||||||| | ||||||||||||||||    
T  17402923 cacttgttaagaaaaccaaaagtagtagttttacattagattcaacaatattttgacttttaaaaagttaaattc 17402997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 40845253 - 40845299
Alignment:
Q  171 tgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||| |||  |||||||||||||||||| |||||||||||||||    
T  40845253 tgtttgctttggtttcaacaatattttgatttttaaaaagttaaatt 40845299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 14331817 - 14331886
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||||||  || ||| ||| ||||| |||||||||| |||||| | ||||||||||||||||    
T  14331817 gttaaggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattc 14331886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 21198278 - 21198241
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaa 58  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  21198278 ataaattaacaagtgtaaaaataatgagagtgatgaaa 21198241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 22346372 - 22346295
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| | ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | ||||||| |||||||    
T  22346372 aggacaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaaattaaatt 22346295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 44359798 - 44359729
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||||||  || ||| ||| ||||| |||||||||| |||||| | ||||||||||||||||    
T  44359798 gttaaggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattc 44359729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 46296280 - 46296243
Alignment:
Q  180 tgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||||||||||||| | |||||||||||||||    
T  46296280 tgcattcaacaatattttgacttttaaaaagttaaatt 46296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 11385961 - 11386029
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| |||||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  11385961 gttaagaaaaccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 11386029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 28277608 - 28277540
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||| |||| |||  ||||||||||||  |||||||| ||||| ||| |||||||||||||||    
T  28277608 gttaaggaaatcaaaagtaacatgtttgcattgttttcaacaacattttaatttttaaaaagttaaatt 28277540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 43433755 - 43433823
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| ||| |||||||| ||||  |||||||| ||||| ||| |||||||||||||||    
T  43433755 gttaaggaagccaaaagtagtatgtttgtattggtttcaacaacattttaatttttaaaaagttaaatt 43433823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 50295535 - 50295491
Alignment:
Q  173 tttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||  |||||||||||||||| | |||||||||||||||    
T  50295535 tttgcattgatttcaacaatattttgacttttaaaaagttaaatt 50295491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 52341558 - 52341650
Alignment:
Q  128 taacaagtttcttag-gacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||||||  ||||||||||||||||||||||  || ||||||||||||| ||||||||| ||||||| | ||||||||||||||||    
T  52341558 taacaagtttcttaaagacacttgttaaggaaaccaaaattagtatgtttgcattggattcaacaacattttgacttttaaaaagttaaattc 52341650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 35675324 - 35675250
Alignment:
Q  145 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||| ||| |||| ||| ||||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  35675324 cacttgttaagaaaatcaaaagtagtatgtttgcattgaattcaacaatattttaacttttaaaaagttaaattc 35675250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 39158460 - 39158388
Alignment:
Q  145 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaat 216  Q
    ||||||||||||||| |||| ||| ||||||| ||||| ||| ||||||||||| ||| ||||||||||||||    
T  39158460 cacttgttaaggaaatcaaaagtagtatgtttacattgaattgaacaatattttaatttttaaaaagttaaat 39158388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 966556 - 966631
Alignment:
Q  144 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||||||| |||| ||| ||  ||| ||||| ||||||||||||||| ||| ||||||||||||||||    
T  966556 acacttgttaaggaaatcaaaagtagtagtttttcattggattcaacaatattttaatttttaaaaagttaaattc 966631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 23765549 - 23765626
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| ||||||||||| | ||| |||  ||||||||||||  |||||||| ||||||||| |||||||||||||||    
T  23765549 aggacaattgttaaggaagctaaaagtagcatgtttgcattggtttcaacaacattttgatttttaaaaagttaaatt 23765626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 30475405 - 30475473
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| ||| |||||||||||||  ||||||||||||||||   |||||||||||||||    
T  30475405 gttaaggaagccaaaagtaatatgtttgcattggtttcaacaatattttgacatttaaaaagttaaatt 30475473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 30617918 - 30617998
Alignment:
Q  139 ttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||| ||||| |||||||||||||| ||| || | |||||||| ||||||||||||||  | | ||||||||||||||||    
T  30617918 ttagggcacttattaaggaaaccaaaagtagtaggattgcattggattcaacaatatttgaacttttaaaaagttaaattc 30617998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 34316852 - 34316784
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  34316852 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 34316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 19329036 - 19328989
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  19329036 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 19328989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 31754939 - 31754986
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  31754939 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 31754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 29462769 - 29462831
Alignment:
Q  138 cttaggacacttgttaaggaaa-ccaaatgtatatgtttgcattgcattcaacaatattttga 199  Q
    |||||||||||||||||||||| | ||||  |||||||| ||||| ||||||||| |||||||    
T  29462769 cttaggacacttgttaaggaaatcgaaattaatatgtttacattggattcaacaacattttga 29462831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 15986246 - 15986315
Alignment:
Q  150 gttaaggaaaccaaatgtata-tgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||| ||| ||| | ||||||||||| ||||||||||||| ||| | ||||||| ||||||||    
T  15986246 gttaaggaaactaaaagtagaatgtttgcattgaattcaacaatattctgacttttaaaaatttaaattc 15986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 35808534 - 35808457
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| | ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  35808534 aggacaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 35808457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 40436052 - 40436129
Alignment:
Q  141 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||| | |||||| |||||||| |||  |||||||| |||  |||||||||||||||||  |||||||||||||||    
T  40436052 aggacaatggttaagaaaaccaaaagtagcatgtttgctttggtttcaacaatattttgatatttaaaaagttaaatt 40436129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 34016626 - 34016674
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||||  |||||||| ||||||| | ||||||||||||||||    
T  34016626 atgtttgcattgatttcaacaacattttgacttttaaaaagttaaattc 34016674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 37439647 - 37439615
Alignment:
Q  22 taaattagcaagtataaaaataatgagagtgat 54  Q
    ||||||||||||| |||||||||||||||||||    
T  37439647 taaattagcaagtgtaaaaataatgagagtgat 37439615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 50514742 - 50514674
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||| |||  ||||||||||||  |||||||| ||||| | | |||||||||||||||    
T  50514742 gttaaggaaaccaaaagtagcatgtttgcattggtttcaacaacattttaacttttaaaaagttaaatt 50514674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 90036 - 90117
Alignment:
Q  319 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 402  Q
    ||||||||||||| || |||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  90036 actcaagacttgatagtttgaat-ttcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 90117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 89420 - 89454
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  89420 ataaattagcaagtgtaaaaataatgagagtgatg 89454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 32027 - 32106
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 402  Q
    ||||||| |||||||||||| ||||||||| |||| ||||| ||||||||| |||||||||  ||||||||||||||||||    
T  32027 caagactagaaagcttgaatattcttttccgctttatgcatcgttgttcttctaggacttc-atttgtcaatcatcaaaac 32106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 31080 - 31122
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaataata 63  Q
    ||||||||| |||| || |||||||||||||||||||||||||    
T  31080 ataaattagtaagtgtagaaataatgagagtgatgaaataata 31122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 1164 - 1273
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    |||||||||| ||||||||| ||||||||| |||||||||| |||| || | ||||||||| ||||||| ||||||||||| ||| |||| ||  ||||     
T  1164 caagacttgatagcttgaat-ttcttttccgctttttgcatcgttgctcgtctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtcaagg 1261  T
Q  422 catatatgcaca 433  Q
    ||||||| ||||    
T  1262 catatattcaca 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 433
Target Start/End: Complemental strand, 2239 - 2130
Alignment:
Q  322 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 421  Q
    |||||||||| ||||||||| ||||||||| |||||||||| |||| || | ||||||||| ||||||| ||||||||||| ||| |||| ||  ||||     
T  2239 caagacttgatagcttgaat-ttcttttccgctttttgcatcgttgctcgtctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtcaagg 2142  T
Q  422 catatatgcaca 433  Q
    ||||||| ||||    
T  2141 catatattcaca 2130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 5300198 - 5300263
Alignment:
Q  145 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaa 209  Q
    |||||||||||||||||||| ||| || |||||||||| ||||||||||||||||| | |||||||    
T  5300198 cacttgttaaggaaaccaaaagtagtaagtttgcattgaattcaacaatattttgacttttaaaaa 5300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 45337984 - 45338052
Alignment:
Q  150 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||| ||| |||||||||||||   |||| || ||||||||| |||||||||||||||    
T  45337984 gttaaggaaaccaaaagtagtatgtttgcattggtctcaataacattttgatttttaaaaagttaaatt 45338052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 25249449 - 25249402
Alignment:
Q  170 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  25249449 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 25249402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 30351590 - 30351637
Alignment:
Q  168 atatgtttgcattgcattcaacaatattttgattattaaaaagttaaa 215  Q
    |||||||||||||| ||||||||||||||| | | |||||||||||||    
T  30351590 atatgtttgcattggattcaacaatattttaacttttaaaaagttaaa 30351637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 37923038 - 37922989
Alignment:
Q  169 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||||||||||| |||||| |||||||||| |  |||||||||||||||    
T  37923038 tatgtttgcattggattcaataatattttgacttctaaaaagttaaattc 37922989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 10694787 - 10694855
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||| || |||||||||  |||||||| ||||||| | |||||||||||||||    
T  10694787 gttaaggaagccaaaagtatcatatttgcattgatttcaacaacattttgacttttaaaaagttaaatt 10694855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 19389439 - 19389371
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||| |||| |||  ||||||||||||  |||||| ||||||||| | |||||||||||||||    
T  19389439 gttaaggaaatcaaaagtagcatgtttgcattgttttcaacgatattttgacttttaaaaagttaaatt 19389371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 11659228 - 11659311
Alignment:
Q  136 ttcttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||| || | ||||||||||||||| | | ||| ||| ||||| ||||||||||||||| ||| ||||||||||||||||    
T  11659228 ttcttagggcaatggttaaggaaaccaaaagcagtatatttacattgaattcaacaatattttaatttttaaaaagttaaattc 11659311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 2239556 - 2239631
Alignment:
Q  144 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||||||||| | |||||| ||| ||| |||| |||| ||||||||||||||| | | ||||||||||||||||    
T  2239556 acacttgttaagaataccaaaagtagtatatttgtattggattcaacaatattttaacttttaaaaagttaaattc 2239631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 20727251 - 20727293
Alignment:
Q  21 ataaattagcaagtataaaaataatgagagtgatgaaataata 63  Q
    ||||||||| |||| || |||||||||||||||||||||||||    
T  20727251 ataaattagtaagtgtagaaataatgagagtgatgaaataata 20727293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 41890242 - 41890192
Alignment:
Q  148 ttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatatttt 197  Q
    ||||||||||||||||| ||| || |||||||||| |||||||||||||||    
T  41890242 ttgttaaggaaaccaaaagtagtaggtttgcattggattcaacaatatttt 41890192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 2136404 - 2136485
Alignment:
Q  138 cttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    |||||| ||||||||||||||||||||  || || ||||| |||| ||||||||||||||| | | || |||||| ||||||    
T  2136404 cttagggcacttgttaaggaaaccaaaattagtaggtttgtattgtattcaacaatattttcacttttcaaaagtcaaattc 2136485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 433
Target Start/End: Original strand, 4183332 - 4183440
Alignment:
Q  324 agacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagaca 423  Q
    |||||| ||| ||||||| |||||||||  |||| ||| ||||||||||||| || ||| ||||||  ||||||||||  ||||||| |||  || ||||    
T  4183332 agacttaaaaacttgaatattcttttccctttttggcactgttgttcttgtaagatttc-ttttgttgatcatcaaaataaaaatatgtctgtcaggaca 4183430  T
Q  424 tatatgcaca 433  Q
    ||||| ||||    
T  4183431 tatattcaca 4183440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 12695339 - 12695298
Alignment:
Q  177 cattgcattcaacaatattttgattattaaaaagttaaattc 218  Q
    ||||| |||||||||| |||||||| ||||||||||||||||    
T  12695339 cattgaattcaacaatgttttgatttttaaaaagttaaattc 12695298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 6999182 - 6999250
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  6999182 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 6999250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 11445448 - 11445380
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    ||||||||||||||| |||  ||||||||||||  |||||||| |||||||   |||||||||||||||    
T  11445448 gttaaggaaaccaaaagtaacatgtttgcattggtttcaacaacattttgacatttaaaaagttaaatt 11445380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 27495123 - 27495171
Alignment:
Q  169 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 217  Q
    |||||||||||||  |||||||| ||||||||| |||||| ||||||||    
T  27495123 tatgtttgcattggtttcaacaacattttgatttttaaaatgttaaatt 27495171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 16900 - 16836
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 213  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||    
T  16900 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagtta 16836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 27068 - 27004
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 213  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||    
T  27068 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagtta 27004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 37234 - 37170
Alignment:
Q  150 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 213  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||    
T  37234 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagtta 37170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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