View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_111 (Length: 245)
Name: NF3173_low_111
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_111 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 14546854 - 14547074
Alignment:
| Q |
10 |
atcatcacaattgtgaaagagtgggaatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcatttttatgataattctca |
109 |
Q |
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| T |
14546854 |
atcatcacaattgtgaaagagtgggaatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcatttttatgataattctca |
14546953 |
T |
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| Q |
110 |
acgactgtgatttctctgattaaatttgggtaaaaatgtgggcataaatgatgagatgattatgtcttggtccaaaaggtaataatcctgaaatttttat |
209 |
Q |
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| T |
14546954 |
acgactgtgatttctctgattaaatttgggtaaaaatgtgggcataaatgatgagataattatgtcttggtccaaaaggtaataatcctgaaatttttat |
14547053 |
T |
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| Q |
210 |
attttaactgtggtatttact |
230 |
Q |
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| T |
14547054 |
attttaactgtggtatttact |
14547074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 30436104 - 30436284
Alignment:
| Q |
35 |
aatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcattttt-atgataattctcaacgactgtgatttctctgattaaa |
133 |
Q |
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| T |
30436104 |
aatcgacaatgatgtcttatatttctacttcttctgtgatgtgctatgcttttatcattttttatgataattct-aacgagtgtgatttctttgattaa- |
30436201 |
T |
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| Q |
134 |
tttgggtaaaaatgtgggcataaatgatgagatgattatgtcttggtccaaaaggtaataatcctgaaatttttatattttaac |
217 |
Q |
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| T |
30436202 |
tatgggtaaaa-tgtggacataaatgatgagacgattttgccttgttccaaaaggtaataatcatgaactttttatattttaac |
30436284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 11883534 - 11883375
Alignment:
| Q |
10 |
atcatcacaattgtgaaagagtgggaatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcatttttatgataattctca |
109 |
Q |
| |
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|||||||||||||||| || | |||| |||| || ||||||||||||| |||||| | | ||| ||||||||| || ||||||| |||||| ||| |
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| T |
11883534 |
atcatcacaattgtgattgaacgaaaatcatcaacgaagtcttatatttctacttcttatttgttgtgctatgtttt-atattttttataataattttca |
11883436 |
T |
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| Q |
110 |
acgactgtgatttctctgattaaatttgggtaaaaatgtgggcataaatgatgagatgatt |
170 |
Q |
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|| |||||||||||| ||||||||| || ||||||||||| |||||||||||| |||||| |
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| T |
11883435 |
acaactgtgatttctttgattaaatatgagtaaaaatgtgcacataaatgatgacatgatt |
11883375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 12095212 - 12095273
Alignment:
| Q |
35 |
aatcgtcaatgatgtcttatatttcttcttcttctccgatgttctatgtttttatcattttt |
96 |
Q |
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||||||||| ||||| ||||||||| |||||| || | ||| ||||||||||||||||||| |
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| T |
12095212 |
aatcgtcaacgatgtgctatatttctacttcttatctgttgtgctatgtttttatcattttt |
12095273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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