View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_113 (Length: 244)

Name: NF3173_low_113
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_113
NF3173_low_113
[»] chr7 (24 HSPs)
chr7 (82-195)||(6420631-6420744)
chr7 (69-186)||(1740816-1740933)
chr7 (69-230)||(27893657-27893815)
chr7 (70-233)||(36101868-36102031)
chr7 (72-182)||(35713713-35713823)
chr7 (69-186)||(40169664-40169781)
chr7 (69-186)||(47848689-47848806)
chr7 (71-161)||(12966039-12966129)
chr7 (200-233)||(45601634-45601667)
chr7 (77-154)||(48202884-48202961)
chr7 (107-195)||(1569069-1569157)
chr7 (70-122)||(41948532-41948584)
chr7 (84-154)||(3457394-3457464)
chr7 (151-233)||(28542035-28542117)
chr7 (69-115)||(38920809-38920855)
chr7 (204-233)||(1569178-1569207)
chr7 (68-180)||(5418093-5418206)
chr7 (204-233)||(24549779-24549808)
chr7 (204-233)||(30144937-30144966)
chr7 (204-233)||(30664730-30664759)
chr7 (70-163)||(39811973-39812066)
chr7 (82-122)||(24549907-24549947)
chr7 (204-232)||(29653638-29653666)
chr7 (99-163)||(46356029-46356093)
[»] chr1 (16 HSPs)
chr1 (69-233)||(5338739-5338904)
chr1 (69-185)||(40416386-40416502)
chr1 (69-233)||(13827671-13827837)
chr1 (69-164)||(48431578-48431673)
chr1 (106-233)||(43375689-43375817)
chr1 (69-154)||(3819038-3819123)
chr1 (69-154)||(51812540-51812625)
chr1 (125-233)||(50636164-50636272)
chr1 (69-151)||(43423734-43423816)
chr1 (100-152)||(4590711-4590763)
chr1 (70-154)||(14226011-14226095)
chr1 (71-154)||(27637815-27637898)
chr1 (84-158)||(29807896-29807970)
chr1 (204-236)||(3818944-3818976)
chr1 (201-233)||(43423878-43423910)
chr1 (84-172)||(52561753-52561841)
[»] chr5 (13 HSPs)
chr5 (69-186)||(7359410-7359526)
chr5 (69-177)||(43475255-43475363)
chr5 (106-228)||(27799895-27800017)
chr5 (82-180)||(21093780-21093878)
chr5 (69-154)||(42199301-42199386)
chr5 (69-152)||(10082923-10083006)
chr5 (69-152)||(31636104-31636187)
chr5 (204-236)||(12576948-12576980)
chr5 (69-156)||(18351087-18351175)
chr5 (143-233)||(39322157-39322247)
chr5 (69-122)||(28676610-28676663)
chr5 (82-186)||(9917600-9917704)
chr5 (204-232)||(28005697-28005725)
[»] chr2 (17 HSPs)
chr2 (70-236)||(13240851-13241011)
chr2 (69-158)||(23714439-23714528)
chr2 (69-158)||(24102111-24102200)
chr2 (69-195)||(38434966-38435093)
chr2 (98-181)||(45077799-45077882)
chr2 (69-233)||(11412736-11412898)
chr2 (69-154)||(12141559-12141644)
chr2 (82-154)||(12026187-12026259)
chr2 (204-236)||(31254450-31254482)
chr2 (204-233)||(1626357-1626386)
chr2 (99-163)||(7326333-7326397)
chr2 (204-236)||(7431977-7432009)
chr2 (204-232)||(12026097-12026125)
chr2 (204-236)||(26784428-26784460)
chr2 (82-186)||(26784490-26784594)
chr2 (204-236)||(41779198-41779230)
chr2 (69-161)||(44411727-44411819)
[»] chr4 (26 HSPs)
chr4 (69-177)||(50662402-50662511)
chr4 (72-195)||(50680757-50680881)
chr4 (69-184)||(33709939-33710054)
chr4 (69-186)||(25967411-25967528)
chr4 (132-186)||(15662008-15662062)
chr4 (90-164)||(28497525-28497599)
chr4 (84-233)||(31339566-31339715)
chr4 (68-154)||(46715554-46715640)
chr4 (82-122)||(38570961-38571001)
chr4 (91-186)||(13805415-13805510)
chr4 (69-151)||(29398833-29398915)
chr4 (69-154)||(1427466-1427551)
chr4 (69-154)||(7092402-7092487)
chr4 (101-185)||(20105669-20105754)
chr4 (204-233)||(25574986-25575015)
chr4 (204-233)||(26024941-26024970)
chr4 (204-233)||(26025010-26025039)
chr4 (204-233)||(44047462-44047491)
chr4 (204-233)||(47147535-47147564)
chr4 (69-122)||(50471541-50471594)
chr4 (69-122)||(51252675-51252728)
chr4 (204-232)||(6843777-6843805)
chr4 (204-232)||(7544615-7544643)
chr4 (204-236)||(20999162-20999194)
chr4 (70-154)||(38903902-38903986)
chr4 (138-186)||(56439743-56439791)
[»] chr3 (18 HSPs)
chr3 (69-186)||(45289241-45289358)
chr3 (69-233)||(36303994-36304157)
chr3 (69-177)||(41842670-41842778)
chr3 (69-154)||(21200563-21200648)
chr3 (70-163)||(39235154-39235247)
chr3 (200-235)||(33307272-33307307)
chr3 (69-174)||(19737012-19737117)
chr3 (69-174)||(19757915-19758020)
chr3 (69-117)||(37487161-37487209)
chr3 (69-180)||(42510172-42510281)
chr3 (89-163)||(27917605-27917679)
chr3 (204-233)||(29475848-29475877)
chr3 (204-233)||(36820068-36820097)
chr3 (204-233)||(41452831-41452860)
chr3 (73-185)||(29928412-29928524)
chr3 (73-185)||(29977566-29977678)
chr3 (99-163)||(43694938-43695002)
chr3 (204-236)||(47804751-47804783)
[»] chr8 (17 HSPs)
chr8 (117-183)||(11733810-11733876)
chr8 (69-233)||(41971881-41972045)
chr8 (112-183)||(5908704-5908775)
chr8 (69-152)||(9695646-9695729)
chr8 (69-162)||(10080081-10080173)
chr8 (69-154)||(16917199-16917283)
chr8 (99-164)||(29520695-29520760)
chr8 (84-181)||(30559723-30559820)
chr8 (90-162)||(42584407-42584479)
chr8 (69-157)||(44373791-44373879)
chr8 (89-142)||(9905075-9905128)
chr8 (69-158)||(12611550-12611639)
chr8 (204-233)||(35643697-35643726)
chr8 (205-233)||(10079998-10080026)
chr8 (204-236)||(12966402-12966434)
chr8 (69-157)||(30748472-30748560)
chr8 (99-163)||(40813369-40813433)
[»] chr6 (8 HSPs)
chr6 (69-163)||(9593879-9593973)
chr6 (69-186)||(24665825-24665943)
chr6 (73-180)||(6293542-6293649)
chr6 (200-233)||(34596-34629)
chr6 (200-233)||(10617325-10617358)
chr6 (70-154)||(43234-43318)
chr6 (86-154)||(6907009-6907077)
chr6 (93-181)||(14389323-14389411)
[»] scaffold0373 (1 HSPs)
scaffold0373 (204-232)||(2393-2421)
[»] scaffold0015 (1 HSPs)
scaffold0015 (204-232)||(66699-66727)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 6420744 - 6420631
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagaga 181  Q
    ||||||||||||||| ||||||| |||||||||| ||||||  |||||||  |||||||| |||||||||||| ||||| ||| || ||||||||||||     
T  6420744 tggaaactaggcttaggtggtttgggcatgtagagagaagacttgtagatactgtagtaaggagagtagatcagatgaatgatagtcagatcactagagg 6420645  T
Q  182 cagagttaggccta 195  Q
    ||||| ||| ||||    
T  6420644 cagaggtagaccta 6420631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 1740816 - 1740933
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||||||| ||||||||||||||| ||||||| || ||||||| || |||  ||| ||| ||||||||| |||||||||||| ||| ||| | ||     
T  1740816 gtagaaaatatggtggaaactaggcttaggtggtttgggtatgtagataggagaattgtggattttgtagtaaggagagtagatcagatggagggtagtc 1740915  T
Q  169 agatcactagagacagag 186  Q
    | |||||||||| |||||    
T  1740916 aaatcactagagccagag 1740933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 27893815 - 27893657
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||| | ||| |||||| |||||||| |||||||   ||||||||||||   | ||||||| ||||| | | |||||||||||| ||| |||||  |     
T  27893815 gtagaatagatggtggaaaataggcttaggtggtttgaacatgtagaaaga---tctgtagattttgtacttaggagagtagatcagatggaggatattc 27893719  T
Q  169 agatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgag 230  Q
    ||||||||||||| ||||  || |||| || ||| |||||||||||| ||||||||||||||    
T  27893718 agatcactagagatagaggaagtcctagaaaaactattaagaaagatttagagattaatgag 27893657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 36102031 - 36101868
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtta 169  Q
    ||||||| |||||||||| |||||||| ||||||| || ||||||| ||||||  | ||||| |||||  |  |||||||||||| ||| || || || |    
T  36102031 tagaaaagatgttggaaaataggcttaggtggtttggggatgtagagagaagacctatagattttgtaacagggagagtagatcatatggagaatagtca 36101932  T
Q  170 gatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttg 233  Q
    ||||||||||| |||||  || |||| || ||  |||| ||||||| || ||||||||||||||    
T  36101931 gatcactagaggcagaggaagacctagaaaaattattatgaaagatttatagattaatgagttg 36101868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 35713713 - 35713823
Alignment:
Q  72 gaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttaga 171  Q
    ||||| ||| |||||| |||||||| ||||||| |||||||||| ||||||  |||| || ||||||||| |||||||||||  ||||||| | |||| |    
T  35713713 gaaaaaatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtacattttgtagtaaggagagtagatctgatgaagggtagttata 35713812  T
Q  172 tcactagagac 182  Q
    ||| |||||||    
T  35713813 tcattagagac 35713823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 40169664 - 40169781
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| |||||| |||||||| ||||||| |||||||||| | ||||   |||||| ||||   || |||||||||||||||| ||||| |||    
T  40169664 gtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagataagacacgtagattttgtgtgaaggagagtagatcaaatggaggattgtt 40169763  T
Q  169 agatcactagagacagag 186  Q
    ||||| || ||| |||||    
T  40169764 agatccctggaggcagag 40169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 47848689 - 47848806
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| |||||| |||||||| ||||||| ||||||| || ||||||  |||| ||  |||| ||| |||||||||||| ||| ||||| ||     
T  47848689 gtagaaaagatggtggaaaataggcttaggtggtttgggcatgtcgagagaagacttgtaaattctgtactaaggagagtagatcagatggaggatagtc 47848788  T
Q  169 agatcactagagacagag 186  Q
     ||||||||||| |||||    
T  47848789 tgatcactagaggcagag 47848806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 12966039 - 12966129
Alignment:
Q  71 agaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaag 161  Q
    |||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||   ||| ||  |||||||| ||||||||||||| |||||    
T  12966039 agaaaagatggtggaaactatgcttaggtggtttgggcatgtagagagaagacccgtaaattctgtagtaaggagagtagatcaagtgaag 12966129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 45601634 - 45601667
Alignment:
Q  200 aaccattaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  45601634 aaccattaagaaagatctagagattaatgagttg 45601667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 48202961 - 48202884
Alignment:
Q  77 tatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||| ||||| ||||||||| |||||||  ||||||||| ||||||  |||||||  |||||||| ||||||||||||    
T  48202961 tatggtggaatctaggcttaggtggtttgcgcatgtagagagaagacttgtagattctgtagtaaggagagtagatca 48202884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 1569069 - 1569157
Alignment:
Q  107 gcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagacagagttaggccta 195  Q
    ||||||||| |||||  ||||||||||||||| || |||||||||||| ||| ||||| || ||||  |||||| ||||| ||| ||||    
T  1569069 gcatgtagagagaagtcgtgtagatgttgtagaaaggagagtagatcagatggaggatagtcagattgctagaggcagaggtagtccta 1569157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 41948532 - 41948584
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaaga 122  Q
    ||||||| ||| ||||||||||||||| ||||||| |||||||||| ||||||    
T  41948532 tagaaaagatggtggaaactaggcttaagtggtttgggcatgtagagagaaga 41948584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 3457394 - 3457464
Alignment:
Q  84 gaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||||| ||| ||||||| |||||  ||| ||||||  ||||||||||||||||| |||||| |||||    
T  3457394 gaaactaggtttaggtggtttgggcattcagagagaagacatgtagatgttgtagtaatgagagtggatca 3457464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 28542117 - 28542035
Alignment:
Q  151 atcaaatgaaggatggttagatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttg 233  Q
    |||| |||||||||  | |||||||||||| || ||  || |||| || ||| |||||||||||| |||||||||||||||||    
T  28542117 atcagatgaaggataatcagatcactagaggcataggaagacctagaaaaactattaagaaagatttagagattaatgagttg 28542035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 38920809 - 38920855
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtaga 115  Q
    |||||||| ||| ||||||||||||||| ||||||| ||||||||||    
T  38920809 gtagaaaagatggtggaaactaggcttaagtggtttgggcatgtaga 38920855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 1569178 - 1569207
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  1569178 attaagaaagatctagagattaatgagttg 1569207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 5418093 - 5418206
Alignment:
Q  68 tgtagaaaatatgttggaaactaggcttatg-tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatgg 166  Q
    ||||||||||||| |||||| |||||||  | | ||||  ||||||||||||||||  ||| |||  ||||||||  |||||||||||  || ||||| |    
T  5418093 tgtagaaaatatggtggaaaataggctttagattgtttgtgcatgtagaaagaagacctgttgattctgtagtaagtagagtagatcaggtggaggatag 5418192  T
Q  167 ttagatcactagag 180  Q
    | ||||||||||||    
T  5418193 tcagatcactagag 5418206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 24549808 - 24549779
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  24549808 attaagaaagatctagagattaatgagttg 24549779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 30144937 - 30144966
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  30144937 attaagaaagatctagagattaatgagttg 30144966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 30664730 - 30664759
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  30664730 attaagaaagatctagagattaatgagttg 30664759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 39811973 - 39812066
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    ||||||| ||| || ||||| |||||| || |||| |||||||||| ||||||  |||||||  | |||||| |||||||||||| ||| ||||    
T  39811973 tagaaaaaatggtgaaaactcggcttaggtagtttgggcatgtagagagaagagatgtagattctatagtaaggagagtagatcagatggagga 39812066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 24549947 - 24549907
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaaga 122  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  24549947 tggaaactaggcttaggtggtttgggcatgtagagagaaga 24549907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 29653666 - 29653638
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  29653666 attaagaaagatctagagattaatgagtt 29653638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 46356093 - 46356029
Alignment:
Q  99 tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    |||||| |||||||||| ||||||   ||||||||||| ||||  ||||||||||||||| ||||    
T  46356093 tggtttgggcatgtagagagaagacacgtagatgttgtggtaagaagagtagatcaaatggagga 46356029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 5338739 - 5338904
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||||||  ||||| ||||||| |||||| ||| ||||||  |||||||| | |||||| |||||||||||| ||| |||||  |     
T  5338739 gtagaaaagatggtggaaactgagcttaggtggtttgggcatgcagagagaagacctgtagatgctttagtaaggagagtagatcagatggaggatattc 5338838  T
Q  169 agatcactagagacagagttaggcctaaaagaaccatta-agaaagatctagagattaatgagttg 233  Q
    |||||||||||| ||||  ||| |||| || ||| || | ||||||||||||||||||||||||||    
T  5338839 agatcactagaggcagaagtagacctagaaaaactataagagaaagatctagagattaatgagttg 5338904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 40416386 - 40416502
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||||| ||||||| ||||||| |||||||||| ||||||  ||||||| ||||||||| |||||||||||| ||| ||||| ||     
T  40416386 gtagaaaagatggtggaaacgaggcttaggtggtttaggcatgtagagagaagaactgtagattttgtagtaaggagagtagatcagatgcaggatagtc 40416485  T
Q  169 agatcactagagacaga 185  Q
    ||||||| | |||||||    
T  40416486 agatcaccaaagacaga 40416502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 13827837 - 13827671
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| | | ||||||||||| | | ||||||| | |||||||| |||||| ||||||||  |||||||| |||||||||||| ||| |  || ||     
T  13827837 gtagaaaagacggtggaaactagggtaaggtggtttggacatgtagagagaagaagtgtagattctgtagtaaggagagtagatcatatggaacatagtc 13827738  T
Q  169 agatcactagagacagagttaggcctaaaagaaccattaagaaaga--tctagagattaatgagttg 233  Q
    |||||||||||| |||||  || |||| || ||| ||||||||| |  |||||||||||||||||||    
T  13827737 agatcactagaggcagaggaagacctagaaaaactattaagaaaaaagtctagagattaatgagttg 13827671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 48431673 - 48431578
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggat 164  Q
    |||||||| ||| |||||| |||||||| ||||||| |||||||||| ||||||  ||||||| |||||||||||||||| ||||| ||| |||||    
T  48431673 gtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagtaaagagagttgatcagatggaggat 48431578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 43375817 - 43375689
Alignment:
Q  106 ggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagacagagttaggccta-aaagaacca 204  Q
    |||||||||| ||||||  | |||||  ||||||||||||||||||||| |||  |||| || | |||||||||| |||||  || |||| ||| ||| |    
T  43375817 ggcatgtagagagaagacctatagattatgtagtaaagagagtagatcagatggtggatagtaaaatcactagaggcagagggagacctagaaataacta 43375718  T
Q  205 ttaagaaagatctagagattaatgagttg 233  Q
    ||||||||||| |||||||||||||||||    
T  43375717 ttaagaaagatttagagattaatgagttg 43375689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 3819123 - 3819038
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| ||| |||||| |||| ||||||| |||||||||||||||||  ||| |||  | |||||||||||||||||||    
T  3819123 gtagaaaagatggtggtaactagacttaagtggtttgggcatgtagaaagaagacttgtggattctctagtaaagagagtagatca 3819038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 51812540 - 51812625
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| ||||||||||||||||||| ||| |||||||||| |||| |  ||||||| |||||||||  | |||||||||    
T  51812540 gtagaaaagatggtggaaactaggcttatgtgatttgggcatgtagagagaaaaattgtagattttgtagtaagaaaagtagatca 51812625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 50636164 - 50636272
Alignment:
Q  125 tgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagatt 224  Q
    |||||| |||||||||| |||||||||||||||| |||||  | |||||| | ||| ||||| ||| | ||| | ||| ||||||| | |||||||||||    
T  50636164 tgtagacgttgtagtaaggagagtagatcaaatggaggataatcagatcagtcgaggcagaggtagacttaagaaaactattaagataaatctagagatt 50636263  T
Q  225 aatgagttg 233  Q
    | |||||||    
T  50636264 attgagttg 50636272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 43423734 - 43423816
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtaga 151  Q
    |||||||| ||| ||||||||||||||| ||||||| | |||||||| ||||||  |||||||  ||||||||  ||||||||    
T  43423734 gtagaaaagatggtggaaactaggcttaggtggtttggccatgtagagagaagacttgtagattatgtagtaagtagagtaga 43423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 4590763 - 4590711
Alignment:
Q  100 ggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagat 152  Q
    ||||| |||||| ||| ||||||| ||||||| ||||||||||||||||||||    
T  4590763 ggtttgggcatgcagagagaagatctgtagattttgtagtaaagagagtagat 4590711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 14226095 - 14226011
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||| ||| |||||| |||||||| ||||||| |||||||||| || |    ||||||| ||||||||| ||||||||||||    
T  14226095 tagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagaggattcctgtagattttgtagtaaggagagtagatca 14226011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 27637898 - 27637815
Alignment:
Q  71 agaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||| ||| | |||||||| |||| ||| ||| |||||||||| | ||||  ||| ||||||||||||| ||||||||||||    
T  27637898 agaaaagatgatagaaactagacttaggtgttttgggcatgtagagaaaagacatgtggatgttgtagtaaggagagtagatca 27637815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 29807896 - 29807970
Alignment:
Q  84 gaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatg 158  Q
    |||||||| |||| ||| ||| |||||||||| ||||||  ||| |||  ||||||||||||||||||| |||||    
T  29807896 gaaactagacttacgtgatttgggcatgtagagagaagacatgtggattatgtagtaaagagagtagattaaatg 29807970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 3818976 - 3818944
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||| ||||||||||||||||||||    
T  3818976 attaagaaagatttagagattaatgagttgaat 3818944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 43423878 - 43423910
Alignment:
Q  201 accattaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||| |||||||    
T  43423878 accattaagaaagatctagagattagtgagttg 43423910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 52561841 - 52561753
Alignment:
Q  84 gaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagat 172  Q
    |||| |||||||| |||||||||||||||||| ||||||    ||||||||| ||||   ||||||||||| ||| ||||  |||||||    
T  52561841 gaaaataggcttaggtggtttcggcatgtagagagaagaccgatagatgttgcagtacgaagagtagatcagatggaggagagttagat 52561753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 7359526 - 7359410
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||||||| |||||| |||| ||| ||||||| |||||||||| ||||||| |||||||  |||||||| |||||||||||| ||| ||||| ||     
T  7359526 gtagaaaatatggtggaaaataggtttaggtggttt-ggcatgtagagagaagatatgtagattctgtagtaaggagagtagatcagatggaggatagtc 7359428  T
Q  169 agatcactagagacagag 186  Q
    | |||||||||| |||||    
T  7359427 atatcactagaggcagag 7359410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 43475255 - 43475363
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||||||||||||| ||||||| || ||  ||| ||||||  ||||||||||||||||| |||||||||||| ||| ||||| ||     
T  43475255 gtagaaaagatggtggaaactaggcttaggtggtttgggtattcagagagaagacctgtagatgttgtagtaaggagagtagatcagatggaggatagtc 43475354  T
Q  169 agatcacta 177  Q
    |||||||||    
T  43475355 agatcacta 43475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 27799895 - 27800017
Alignment:
Q  106 ggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagacagagttaggcctaaaagaaccat 205  Q
    |||||||||| ||||||  |||||||||||||||||  ||| ||||||| ||| ||||| ||  ||||||||||| |||||| || |||| || ||| ||    
T  27799895 ggcatgtagagagaagagatgtagatgttgtagtaagaagattagatcatatggaggatagtcggatcactagaggcagagtaagacctagaaaaactat 27799994  T
Q  206 taagaaagatctagagattaatg 228  Q
    ||||||||| || ||||||||||    
T  27799995 taagaaagaacttgagattaatg 27800017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 21093780 - 21093878
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagag 180  Q
    |||||| |||||||| || |||| ||||||||||  |||||  || |||| |||||||||||||||||||||| ||| ||||| || ||||||||||||    
T  21093780 tggaaaataggcttaggtagtttgggcatgtagagggaagacttggagattttgtagtaaagagagtagatcagatggaggatagtcagatcactagag 21093878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 42199301 - 42199386
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| |||||||||| |||| ||||||| |||||||||| ||||||  |||||||  |||||||| ||||||||||||    
T  42199301 gtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggagagtagatca 42199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 10083006 - 10082923
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagat 152  Q
    |||||||| ||| | |||||||| |||| |||||||||||||||||| ||||||  ||| |||  |||||||||||||||||||    
T  10083006 gtagaaaagatggtagaaactagacttaagtggtttcggcatgtagagagaagacttgtggattctgtagtaaagagagtagat 10082923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 31636187 - 31636104
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagat 152  Q
    |||||||| ||| | |||||||| |||| ||||||| |||||||||| ||||||   || ||||||||||||| ||||||||||    
T  31636187 gtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacccgtggatgttgtagtaaggagagtagat 31636104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 12576980 - 12576948
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||||||||||||||||||||||||    
T  12576980 attaagaaagatctagagattaatgagttgaat 12576948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 18351175 - 18351087
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggca-tgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaa 156  Q
    |||||||||||| | ||||||||||||| ||||||| |||| |||||| ||||||  |||||||  || | ||| ||||||||||||||    
T  18351175 gtagaaaatatggtagaaactaggcttaggtggtttgggcattgtagagagaagacctgtagattatgcaataaggagagtagatcaaa 18351087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 39322247 - 39322157
Alignment:
Q  143 gagagtagatcaaatgaaggatggttagatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttg 233  Q
    |||||||||| | |||| ||||||| | |||||||| |  ||||  || |||| || ||| ||||||||||||||| ||||||||||||||    
T  39322247 gagagtagataagatgatggatggtcatatcactagtggtagaggaagacctagaaaaactattaagaaagatctaaagattaatgagttg 39322157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 28676610 - 28676663
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaaga 122  Q
    |||||||| ||| |||||| ||| |||| |||||||||||||||||| ||||||    
T  28676610 gtagaaaagatggtggaaaatagtcttaggtggtttcggcatgtagagagaaga 28676663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 9917704 - 9917600
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagaga 181  Q
    |||||||| ||||||  ||||||  || |||| | ||||||  ||| ||| |||||||||||||||| ||||| ||| ||||| || | ||||| |||||    
T  9917704 tggaaactcggcttagttggtttgtgcgtgtaaagagaagacatgttgattttgtagtaaagagagtcgatcagatggaggatagtcaaatcacaagaga 9917605  T
Q  182 cagag 186  Q
    |||||    
T  9917604 cagag 9917600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 28005697 - 28005725
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  28005697 attaagaaagatctagagattaatgagtt 28005725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 13241011 - 13240851
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtta 169  Q
    ||||||| ||| ||||||||||||||| ||||||| |||||||||| ||||||  |||||||  | |||||| |||||||||||      | ||| |  |    
T  13241011 tagaaaagatggtggaaactaggcttaggtggtttgggcatgtagagagaagacatgtagattctttagtaaggagagtagatc------atgatagcca 13240918  T
Q  170 gatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttgaat 236  Q
    | ||||||||| |||||  || |||| || ||| ||||||||||||||||||||||| |||||||||    
T  13240917 ggtcactagaggcagaggaagacctagaaaaactattaagaaagatctagagattaacgagttgaat 13240851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 23714528 - 23714439
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatg 158  Q
    |||||||| ||| |||||||||| ||||||| |||| |||||||||| ||||||  ||| |||  |||||||| ||||||||||||||||    
T  23714528 gtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaaggagagtagatcaaatg 23714439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 24102200 - 24102111
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatg 158  Q
    |||||||| ||| |||||||||| ||||||| |||| |||||||||| ||||||  ||| |||  |||||||| ||||||||||||||||    
T  24102200 gtagaaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaaggagagtagatcaaatg 24102111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 38434966 - 38435093
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatg-tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggt 167  Q
    |||||||| ||| |||||||||| |||  | |||||| |||||||| | ||||||  |||||||| | |||||| |||||||||||| ||| ||||| ||    
T  38434966 gtagaaaagatggtggaaactagactttgggtggtttgggcatgtaaagagaagacttgtagatgctttagtaaggagagtagatcatatggaggatagt 38435065  T
Q  168 tagatcactagagacagagttaggccta 195  Q
     |||||||||||| ||||| ||| ||||    
T  38435066 cagatcactagaggcagaggtagaccta 38435093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 45077799 - 45077882
Alignment:
Q  98 gtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagaga 181  Q
    ||||||| |||||||||| |||| |  ||||||| ||||||||| |||||||||||| ||| ||||| || |||||||| ||||    
T  45077799 gtggttttggcatgtagagagaaaacttgtagattttgtagtaaggagagtagatcagatggaggatagtcagatcacttgaga 45077882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 11412736 - 11412898
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaat-gaaggatggt 167  Q
    |||||||||||| |||||| |||||||| || |||| ||||| |||| | ||||  |||||||  ||||||  ||||||||||||| || || || | ||    
T  11412736 gtagaaaatatggtggaaaataggcttaggttgtttgggcatttagagataagaactgtagattctgtagt--agagagtagatcagatggaggggtagt 11412833  T
Q  168 tagatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttg 233  Q
     |||||||||||| |||||  |  |||| || ||| |||| ||||||| |||||||||||||||||    
T  11412834 cagatcactagagccagaggaaaacctagaaaaactattaggaaagat-tagagattaatgagttg 11412898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 12141559 - 12141644
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| ||||||  ||||||| ||||||| |||| ||||||||||||  |||||||  | |||||| ||||||||||||    
T  12141559 gtagaaaagatggtggaaaagaggcttaggtggtttgggcacgtagaaagaagacctgtagattctctagtaaggagagtagatca 12141644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 12026259 - 12026187
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||||||||||| |||||||   |||||||| ||||||  ||||||| ||||| ||| ||||||||||||    
T  12026259 tggaaactaggcttaggtggtttgaccatgtagagagaagacctgtagattttgtactaaggagagtagatca 12026187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 31254450 - 31254482
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||||||||||||||||||||||||    
T  31254450 attaagaaagatctagagattaatgagttgaat 31254482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 1626357 - 1626386
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  1626357 attaagaaagatctagagattaatgagttg 1626386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 7326397 - 7326333
Alignment:
Q  99 tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    |||||| |||||||||| ||||||  ||||||||  || ||||  ||||||||||||||||||||    
T  7326397 tggtttgggcatgtagagagaagacctgtagatgccgtggtaagaagagtagatcaaatgaagga 7326333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 7432009 - 7431977
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||| ||||||||||||||||||||||||    
T  7432009 attaagaaggatctagagattaatgagttgaat 7431977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 12026125 - 12026097
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  12026125 attaagaaagatctagagattaatgagtt 12026097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 26784460 - 26784428
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||| ||||||||||||||||||||    
T  26784460 attaagaaagatatagagattaatgagttgaat 26784428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 26784594 - 26784490
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagaga 181  Q
    ||||||||||||||| || ||||  |||| |||| ||||||| ||| ||| ||||||||| ||| |||||| | ||| ||| | || | ||||||||||     
T  26784594 tggaaactaggcttaggttgtttgtgcatttagagagaagatatgtggattttgtagtaaggagggtagataagatggagggtagtcaaatcactagagg 26784495  T
Q  182 cagag 186  Q
    |||||    
T  26784494 cagag 26784490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 41779230 - 41779198
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    ||||| |||||||||||||||||||||||||||    
T  41779230 attaaaaaagatctagagattaatgagttgaat 41779198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 44411727 - 44411819
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaag 161  Q
    |||| ||| ||| |||||| |||||||  ||||||| | |||||  | ||||||  ||||| ||||| |||||||||||||||||| ||||||    
T  44411727 gtaggaaagatggtggaaaataggcttccgtggttttgacatgtttagagaagacttgtagctgttgcagtaaagagagtagatcagatgaag 44411819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 177
Target Start/End: Original strand, 50662402 - 50662511
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcgg-catgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggt 167  Q
    |||||||| ||| |||||| |||||||| ||||||| || |||||||| ||||||  |||||||  | | |||| ||||||||||| |||||||||| ||    
T  50662402 gtagaaaagatggtggaaagtaggcttaggtggttttgggcatgtagagagaagacttgtagattctattgtaaggagagtagatctaatgaaggatagt 50662501  T
Q  168 tagatcacta 177  Q
    ||||||||||    
T  50662502 tagatcacta 50662511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 50680757 - 50680881
Alignment:
Q  72 gaaaatatgttggaaactaggcttatgtggtttc-ggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttag 170  Q
    ||||| ||| |||||| |||||||| |||||||  |||||||||| |||||   |||||||   ||||||| ||||||||||| |||||||||| |||||    
T  50680757 gaaaagatggtggaaaataggcttaggtggtttatggcatgtagagagaaggcttgtagattccgtagtaaggagagtagatccaatgaaggatagttag 50680856  T
Q  171 atcactagagacagagttaggccta 195  Q
    ||||||| || ||||| ||| ||||    
T  50680857 atcactataggcagaggtagaccta 50680881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 33709939 - 33710054
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||||||||| ||| ||||||| ||||||| || ||||||  ||| |||  ||||||||||||||| ||||| | | ||| | ||     
T  33709939 gtagaaaagatggtggaaactaggtttaggtggtttaggcatgtggagagaagaactgtggattctgtagtaaagagagtggatcagaaggagggtagtc 33710038  T
Q  169 agatcactagagacag 184  Q
    ||||||||||||||||    
T  33710039 agatcactagagacag 33710054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 25967528 - 25967411
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||| || | |||| ||  ||| ||||||||| |||| | ||| |||||  | |||||| |||||||||||| ||||||||| |||    
T  25967528 gtagaaaagatggtggaatcttgacttaagttctttgggcatgtagcaagaggttgtttagattctttagtaaggagagtagatcagatgaaggatagtt 25967429  T
Q  169 agatcactagagacagag 186  Q
    | ||||||||||||||||    
T  25967428 aaatcactagagacagag 25967411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 15662062 - 15662008
Alignment:
Q  132 gttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagacagag 186  Q
    |||||||||| |||||||||||||| ||||||| || ||||||||||||| ||||    
T  15662062 gttgtagtaaggagagtagatcaaacgaaggatagtcagatcactagagatagag 15662008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 28497525 - 28497599
Alignment:
Q  90 aggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggat 164  Q
    ||||||| ||||||| |||||||||| ||||||  |||||||  |||||||| |||||||||||| ||| |||||    
T  28497525 aggcttaggtggtttgggcatgtagagagaagacttgtagattatgtagtaaggagagtagatcagatggaggat 28497599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 31339566 - 31339715
Alignment:
Q  84 gaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagaca 183  Q
    ||||||| ||||| |||||||  ||||||||| ||||||  |||||||  |||||||| || ||||||||||||||||  | || | |||||||||| ||    
T  31339566 gaaactaagcttaggtggtttgagcatgtagagagaagacttgtagattatgtagtaaggatagtagatcaaatgaagagtagtca-atcactagaggca 31339664  T
Q  184 gagttaggcctaaaagaaccat-taagaaagatctagagattaatgagttg 233  Q
    |||  || |||| || ||| || | ||||  ||||||||||||||||||||    
T  31339665 gaggaagacctagaaaaactatatgagaattatctagagattaatgagttg 31339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 46715640 - 46715554
Alignment:
Q  68 tgtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||||| ||| ||||||||||||||| ||||| | |||||||||| ||||||  ||| |||  ||||| || ||||||||||||    
T  46715640 tgtagaaaagatggtggaaactaggcttaggtggtgtgggcatgtagagagaagacatgtggattatgtagcaaggagagtagatca 46715554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 38571001 - 38570961
Alignment:
Q  82 tggaaactaggcttatgtggtttcggcatgtagaaagaaga 122  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  38571001 tggaaactaggcttaggtggtttgggcatgtagaaagaaga 38570961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 13805510 - 13805415
Alignment:
Q  91 ggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagacagag 186  Q
    |||||| ||||||| || ||||||| ||||||  | ||||| |||||| || |||| ||||||| ||| ||||| || |||||||||||| |||||    
T  13805510 ggcttaggtggtttgggtatgtagagagaagacctttagattttgtagcaaggagactagatcacatggaggattgtcagatcactagaggcagag 13805415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 29398833 - 29398915
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtaga 151  Q
    |||||||| ||| |||||| || ||||||||||||| |||||||||| ||||||  | |||||  |||||| | |||||||||    
T  29398833 gtagaaaagatggtggaaaatatgcttatgtggtttgggcatgtagagagaagacctatagattctgtagtgaggagagtaga 29398915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 1427551 - 1427466
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| |||||||||||||||  ||||||  ||||||||| ||| ||  ||| ||| |||| |||| ||||||||||||    
T  1427551 gtagaaaacatggtggaaactaggcttagatggtttgagcatgtagagagaggacctgtggattttgtggtaaggagagtagatca 1427466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 7092487 - 7092402
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||||||| | |||| |||| ||| ||||||| ||||| |||| ||||||  |||||||||| |||||   |||||||||||    
T  7092487 gtagaaaatatgatagaaaataggtttaagtggtttgggcatatagagagaagacatgtagatgttatagtatgaagagtagatca 7092402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 20105754 - 20105669
Alignment:
Q  101 gtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga-tggttagatcactagagacaga 185  Q
    |||| ||||||||||||||| |  |  |||||||||||||| | |||||||||| |||||||| | || |||||||||||| ||||    
T  20105754 gtttgggcatgtagaaagaatacctaaagatgttgtagtaaggggagtagatcagatgaaggattagtcagatcactagaggcaga 20105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 25574986 - 25575015
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  25574986 attaagaaagatctagagattaatgagttg 25575015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 26024970 - 26024941
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  26024970 attaagaaagatctagagattaatgagttg 26024941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 26025039 - 26025010
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  26025039 attaagaaagatctagagattaatgagttg 26025010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 44047491 - 44047462
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  44047491 attaagaaagatctagagattaatgagttg 44047462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 47147535 - 47147564
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  47147535 attaagaaagatctagagattaatgagttg 47147564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 50471541 - 50471594
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaaga 122  Q
    |||||||| ||| ||||||||||| ||| ||||||| |||||||||| ||||||    
T  50471541 gtagaaaagatggtggaaactaggtttaagtggtttgggcatgtagagagaaga 50471594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 51252728 - 51252675
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaaga 122  Q
    |||||||| ||| ||||||||||||||| ||||| | |||||||||| ||||||    
T  51252728 gtagaaaagatggtggaaactaggcttaggtggtatgggcatgtagagagaaga 51252675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 6843777 - 6843805
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  6843777 attaagaaagatctagagattaatgagtt 6843805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 7544643 - 7544615
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  7544643 attaagaaagatctagagattaatgagtt 7544615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 20999162 - 20999194
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||||||||| ||||||||||||||    
T  20999162 attaagaaagatctagagtttaatgagttgaat 20999194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 38903986 - 38903902
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||| ||| |||||||| ||||||  ||||||  |||||| || ||||||  ||||||| ||||||||  ||||||||||||    
T  38903986 tagaaaagatggtggaaactcggcttagttggtttgagcatgtggagagaagacttgtagattttgtagtatggagagtagatca 38903902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 56439743 - 56439791
Alignment:
Q  138 gtaaagagagtagatcaaatgaaggatggttagatcactagagacagag 186  Q
    |||| |||||||||||| ||| ||||| ||||||||||||||| |||||    
T  56439743 gtaaggagagtagatcagatggaggatagttagatcactagaggcagag 56439791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 45289358 - 45289241
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| |||||| |||||||| ||||||| |||| ||||| |||| |  ||||||| |||||||||  ||||||||||| ||| ||||| |||    
T  45289358 gtagaaaagatggtggaaaataggcttaggtggtttgggcacgtagagagaacacttgtagattttgtagtaagaagagtagatcagatggaggatagtt 45289259  T
Q  169 agatcactagagacagag 186  Q
    |||| || ||||| ||||    
T  45289258 agattacaagagatagag 45289241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 36303994 - 36304157
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||||||||| |||  ||| || |||||||||| ||||||  |||||||| | |||||| |||| ||||||| ||  ||| | ||     
T  36303994 gtagaaaagatggtggaaactagg-ttagatgggttgggcatgtagagagaagacctgtagatgctttagtaaggagaatagatcagatagagggtagtc 36304092  T
Q  169 agatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttg 233  Q
    |||| ||||||| |||   ||| ||||  | ||| ||||||||||||||||||||||||||||||    
T  36304093 agattactagaggcagttgtagacctagtaaaactattaagaaagatctagagattaatgagttg 36304157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 41842778 - 41842670
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| ||||||| || |||| ||||||| || ||||||| ||||||   ||||||  |||||||| |||||||||||||||| ||||| ||     
T  41842778 gtagaaaagatggtggaaaccagtcttaggtggtttgggtatgtagagagaagagcggtagattctgtagtaatgagagtagatcaaatggaggatagtc 41842679  T
Q  169 agatcacta 177  Q
    |||||||||    
T  41842678 agatcacta 41842670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 21200563 - 21200648
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| |||||||||| |||| ||||||| |||||||||| ||||||  |||||||  || ||||| ||||||||||||    
T  21200563 gtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgcagtaaggagagtagatca 21200648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 39235154 - 39235247
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    ||||||| ||| | |||| |||||||| ||||||| |||||||||| ||||||  ||||||||||||||||   ||||||||||| ||| ||||    
T  39235154 tagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacctgtagatgttgtagtacgaagagtagatcagatggagga 39235247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 33307272 - 33307307
Alignment:
Q  200 aaccattaagaaagatctagagattaatgagttgaa 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  33307272 aaccattaagaaagatctagagattaatgagttgaa 33307307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 19737012 - 19737117
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| | |||| |||| ||| |||||||  ||||| ||| ||||||  |||||||||||||||||  ||||||||||| ||| ||||  |||    
T  19737012 gtagaaaagatggtagaaaataggtttaggtggtttgagcatgcagagagaagacctgtagatgttgtagtaagaagagtagatcagatggaggagagtt 19737111  T
Q  169 agatca 174  Q
    ||||||    
T  19737112 agatca 19737117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 19757915 - 19758020
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| | |||| |||| ||| |||||||  ||||| ||| ||||||  |||||||||||||||||  ||||||||||| ||| ||||  |||    
T  19757915 gtagaaaagatggtagaaaataggtttaggtggtttgagcatgcagagagaagacctgtagatgttgtagtaagaagagtagatcagatggaggagagtt 19758014  T
Q  169 agatca 174  Q
    ||||||    
T  19758015 agatca 19758020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 37487209 - 37487161
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaa 117  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||||||    
T  37487209 gtagaaaatatgttagaaactagacctatgtggtttgggcatgtagaaa 37487161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 42510281 - 42510172
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||  |||||| |||||||| ||||||| | ||||||||  |||||  | ||||| |||| |||| |||||||||||| ||| ||||| ||     
T  42510281 gtagaaaagatagtggaaaataggcttaggtggtttggacatgtaga--gaagacctatagattttgtggtaaggagagtagatcagatggaggatagtc 42510184  T
Q  169 agatcactagag 180  Q
    ||||||||||||    
T  42510183 agatcactagag 42510172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 27917605 - 27917679
Alignment:
Q  89 taggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    ||||||||  |||||| | |||||||||||||||  ||||||||||||| || | ||| ||||||||||| ||||    
T  27917605 taggcttagatggtttggacatgtagaaagaagacttgtagatgttgtattagaaagaatagatcaaatggagga 27917679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 29475848 - 29475877
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  29475848 attaagaaagatctagagattaatgagttg 29475877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 36820097 - 36820068
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  36820097 attaagaaagatctagagattaatgagttg 36820068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 41452860 - 41452831
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  41452860 attaagaaagatctagagattaatgagttg 41452831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 29928524 - 29928412
Alignment:
Q  73 aaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagat 172  Q
    |||||||| |||||| |||||||| ||||||| | ||||| || | || |  | |||||  |||||||| ||||| |||||| || |||||| || ||||    
T  29928524 aaaatatgctggaaaataggcttaggtggtttagtcatgttgagaaaaaacctatagattatgtagtaacgagagcagatcagataaaggatagtcagat 29928425  T
Q  173 cactagagacaga 185  Q
    | |||||||||||    
T  29928424 ccctagagacaga 29928412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 29977678 - 29977566
Alignment:
Q  73 aaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagat 172  Q
    |||||||| |||||| |||||||| ||||||| | ||||| || | || |  | |||||  |||||||| ||||| |||||| || |||||| || ||||    
T  29977678 aaaatatgctggaaaataggcttaggtggtttagtcatgttgagaaaaaacctatagattatgtagtaacgagagcagatcagataaaggatagtcagat 29977579  T
Q  173 cactagagacaga 185  Q
    | |||||||||||    
T  29977578 ccctagagacaga 29977566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 43695002 - 43694938
Alignment:
Q  99 tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    |||||| |||||||||| ||||||  ||||||||| || ||||  ||| ||||||||||||||||    
T  43695002 tggtttgggcatgtagagagaagacctgtagatgtcgtcgtaagaagattagatcaaatgaagga 43694938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 47804783 - 47804751
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||| ||||||||||||||||||||    
T  47804783 attaagaaagatttagagattaatgagttgaat 47804751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 11733810 - 11733876
Alignment:
Q  117 agaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagaca 183  Q
    ||||||| ||||||||||||||||| ||||||||||||  || ||||| || |||||||||||||||    
T  11733810 agaagatttgtagatgttgtagtaaggagagtagatcacgtggaggatagtcagatcactagagaca 11733876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 41972045 - 41971881
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggtt 168  Q
    |||||||| ||| |||||| || | ||| ||||||| | |||||||| |||||| |||||||| || ||| || ||||||||||||  || | ||| ||     
T  41972045 gtagaaaagatggtggaaaataagtttaggtggtttggacatgtagagagaagacgtgtagattttctagcaaggagagtagatcaggtggacgatagtc 41971946  T
Q  169 agatcactagagacagagttaggcctaaaagaaccattaagaaagatctagagattaatgagttg 233  Q
    | |||||||||| || ||  |  |||| || ||| | |||||||||| |||||||||||||||||    
T  41971945 aaatcactagaggcaaaggaaaacctagaaaaactactaagaaagatttagagattaatgagttg 41971881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 5908704 - 5908775
Alignment:
Q  112 tagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagagaca 183  Q
    |||| ||||||  ||||||| ||||||||| ||||||||||||  || |||||||| |||||||||||||||    
T  5908704 tagagagaagacctgtagattttgtagtaaggagagtagatcaggtggaggatggtcagatcactagagaca 5908775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 9695646 - 9695729
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagat 152  Q
    |||||||| ||| |||||||| |||||| ||||||| |||||||||| |||||   |||||||  || ||||||||||||||||    
T  9695646 gtagaaaagatggtggaaactcggcttaggtggtttgggcatgtagagagaagtcctgtagattctgaagtaaagagagtagat 9695729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 10080173 - 10080081
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagg 162  Q
    |||||||| ||| |||||||||||| |   |||||| |||||||||| ||||||  ||  ||| ||||||||| ||||||||||||||||||||    
T  10080173 gtagaaaagatggtggaaactaggcctga-tggtttgggcatgtagagagaagacctgaggattttgtagtaaggagagtagatcaaatgaagg 10080081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 16917199 - 16917283
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    |||||||| ||| || |||||||||||| ||||||| |||||||| | |||||   ||||||| ||||||||| ||||||||||||    
T  16917199 gtagaaaagatggtgcaaactaggcttaggtggtttgggcatgtaaagagaaggcttgtagat-ttgtagtaaggagagtagatca 16917283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 29520695 - 29520760
Alignment:
Q  99 tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggat 164  Q
    |||||| |||||||||| ||||||  ||||||| ||||||||| |||||||||||| ||| |||||    
T  29520695 tggtttgggcatgtagagagaagacttgtagattttgtagtaaggagagtagatcagatggaggat 29520760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 30559723 - 30559820
Alignment:
Q  84 gaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagaga 181  Q
    |||| |||||||| ||||||| ||||| |||| ||||||  ||||||| ||||||||| || ||| ||||| ||| ||||| ||  ||||||||||||    
T  30559723 gaaaataggcttaggtggtttgggcatttagagagaagacatgtagattttgtagtaaggacagtggatcagatggaggatagtcggatcactagaga 30559820  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 42584407 - 42584479
Alignment:
Q  90 aggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagg 162  Q
    ||||||| ||||||| |||||||||| |||| |  ||||||||||||||||   ||||||||||| |||||||    
T  42584407 aggcttaggtggtttgggcatgtagagagaaaacctgtagatgttgtagtacgaagagtagatcagatgaagg 42584479  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 44373791 - 44373879
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaat 157  Q
    |||||||| ||| |||||| |||||||  |||||||  |||||||||   ||||  | ||||| |||||||||||||||||||||||||    
T  44373791 gtagaaaagatggtggaaaataggcttgagtggtttgagcatgtagagtaaagacctatagattttgtagtaaagagagtagatcaaat 44373879  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 9905128 - 9905075
Alignment:
Q  89 taggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaa 142  Q
    |||||||| ||||||| | |||||||| ||||||  ||||||||||||||||||    
T  9905128 taggcttaggtggtttggacatgtagagagaagacttgtagatgttgtagtaaa 9905075  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 12611550 - 12611639
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatg 158  Q
    |||||||| ||| ||||||||||||||| |||||||  | ||||||| |||| |  ||| |||  | ||||||||||||||||| |||||    
T  12611550 gtagaaaagatggtggaaactaggcttaggtggtttgcgtatgtagacagaacacctgtggattatatagtaaagagagtagattaaatg 12611639  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 35643726 - 35643697
Alignment:
Q  204 attaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||||||||||||||    
T  35643726 attaagaaagatctagagattaatgagttg 35643697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 10080026 - 10079998
Alignment:
Q  205 ttaagaaagatctagagattaatgagttg 233  Q
    |||||||||||||||||||||||||||||    
T  10080026 ttaagaaagatctagagattaatgagttg 10079998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 12966434 - 12966402
Alignment:
Q  204 attaagaaagatctagagattaatgagttgaat 236  Q
    |||||||||||| ||||||||||||||||||||    
T  12966434 attaagaaagatttagagattaatgagttgaat 12966402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 30748472 - 30748560
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaat 157  Q
    |||||||| ||| ||||| | ||||||| ||||||| |||||||||| ||||||  |||||||  | ||||||  | ||||||||||||    
T  30748472 gtagaaaagatggtggaatcaaggcttaggtggtttgggcatgtagagagaagacctgtagattctatagtaagcaaagtagatcaaat 30748560  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 40813369 - 40813433
Alignment:
Q  99 tggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    |||||| |||||||||| ||||||| ||||||||  || ||||  ||||||||||||||| ||||    
T  40813369 tggtttgggcatgtagagagaagatctgtagatgccgtggtaagaagagtagatcaaatggagga 40813433  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 9593973 - 9593879
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaagga 163  Q
    |||||||| ||| | |||| |||||||| ||||||| |||||||||| ||||||  |||||||| ||||||||  ||||||||||| ||| ||||    
T  9593973 gtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacatgtagatgctgtagtaagaagagtagatcagatggagga 9593879  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 24665825 - 24665943
Alignment:
Q  69 gtagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtaga-tgttgtagtaaagagagtagatcaaatgaaggatggt 167  Q
    |||||||||||| | |||| |||||||| ||||||| | |||||||| ||||||  |||||| | ||||||||| |||||||||||| |||||| || ||    
T  24665825 gtagaaaatatggtagaaaataggcttaggtggtttggacatgtagagagaagacctgtagatttttgtagtaaggagagtagatcagatgaagcatagt 24665924  T
Q  168 tagatcactagagacagag 186  Q
      |||||| |||| |||||    
T  24665925 cggatcaccagaggcagag 24665943  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 6293649 - 6293542
Alignment:
Q  73 aaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagat 172  Q
    |||||||| ||||||||||| | | ||||||| |||||||||| |||| |  |||||||  |||| ||| ||||||| |||| ||||||||| || | ||    
T  6293649 aaaatatggtggaaactaggttcaggtggtttgggcatgtagagagaacacctgtagattatgtaataaggagagtaaatcagatgaaggatagtcaaat 6293550  T
Q  173 cactagag 180  Q
    ||||||||    
T  6293549 cactagag 6293542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 34629 - 34596
Alignment:
Q  200 aaccattaagaaagatctagagattaatgagttg 233  Q
    ||||||||||||||||||| ||||||||||||||    
T  34629 aaccattaagaaagatctaaagattaatgagttg 34596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 10617358 - 10617325
Alignment:
Q  200 aaccattaagaaagatctagagattaatgagttg 233  Q
    |||||||||||| |||||||||||||||||||||    
T  10617358 aaccattaagaaggatctagagattaatgagttg 10617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 43318 - 43234
Alignment:
Q  70 tagaaaatatgttggaaactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||| ||| ||||||||||||||| ||||| | | |||||||| ||||||| | ||||| ||||||  |  |||||||||||    
T  43318 tagaaaaaatggtggaaactaggcttaggtggtctggccatgtagagagaagatttatagattttgtagcgagaagagtagatca 43234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 6907077 - 6907009
Alignment:
Q  86 aactaggcttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatca 154  Q
    ||||||||||| || |||| |  ||||||| ||||||  ||||||| ||||||||| ||||||||||||    
T  6907077 aactaggcttacgtagtttggttatgtagagagaagacatgtagattttgtagtaaggagagtagatca 6907009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 14389411 - 14389323
Alignment:
Q  93 cttatgtggtttcggcatgtagaaagaagatgtgtagatgttgtagtaaagagagtagatcaaatgaaggatggttagatcactagaga 181  Q
    |||| ||||||| | |||||||| ||||||  | ||||  ||||||||| |||| ||||||| ||| ||||| || |||||||||||||    
T  14389411 cttaggtggtttggacatgtagagagaagacctatagactttgtagtaaggagaatagatcagatggaggatagtcagatcactagaga 14389323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Complemental strand, 2421 - 2393
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  2421 attaagaaagatctagagattaatgagtt 2393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 66699 - 66727
Alignment:
Q  204 attaagaaagatctagagattaatgagtt 232  Q
    |||||||||||||||||||||||||||||    
T  66699 attaagaaagatctagagattaatgagtt 66727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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