View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_116 (Length: 241)
Name: NF3173_low_116
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_116 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5932778 - 5932988
Alignment:
| Q |
19 |
caacttttccaaatacaaactgacacattattgaaaaataacaaaatattaaaacaggacacaaaatcatgaagaatcccataaacatgtctaattcctt |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5932778 |
caacttttccaaatacaaactgacacattattggaaaataacaaaatattaaaacaggacacaaaatcatgaagaatctcataaacatgtctaattcctc |
5932877 |
T |
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| Q |
119 |
gaacagctgcaaacaccatcatatcaacgacgaatcatgcaaaagaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcacctt |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5932878 |
aaacaactgcaaacaccatcatatcaacgacgaatcacacaaaagaagagagtcagattcattcccactcctggagcaccaaccaccacacacgcacctt |
5932977 |
T |
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| Q |
219 |
ccttaatcctt |
229 |
Q |
| |
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||||||||||| |
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| T |
5932978 |
ccttaatcctt |
5932988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 19253518 - 19253606
Alignment:
| Q |
141 |
atcaacgacgaatcatgcaaaagaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaatcctt |
229 |
Q |
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|||| |||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||||||||| |
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| T |
19253518 |
atcatcgacgaattatgcaaaagaatagagtcaaattcagtcccactctaggagcaccaaccacaacacgtgcaccttcgttaatcctt |
19253606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 18197225 - 18197017
Alignment:
| Q |
18 |
acaacttttccaaatacaaactgacacattattgaaaaataacaaaatattaaaacaggacacaaaatcatgaagaatcccataaacatgtctaattcct |
117 |
Q |
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| T |
18197225 |
acaacttttccaaatacaaactgacaaattattgaaaaataacaaaatattaaaacaggacacaaaatcatgaagaatcccataaacatgtctaattcct |
18197126 |
T |
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| Q |
118 |
tgaacagctgcaaacaccatcatatcaacgacgaatcatgcaaaagaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcacct |
217 |
Q |
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|||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
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| T |
18197125 |
cgaacagttgcaaacaccatcatatcaacgaggaatcacgcaaaagaagagagtcagattcattcccacttctggagcaccaaccaccacacatgcacat |
18197026 |
T |
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| Q |
218 |
tccttaatc |
226 |
Q |
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||||||||| |
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| T |
18197025 |
tccttaatc |
18197017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 6859 - 6921
Alignment:
| Q |
163 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaat |
225 |
Q |
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||||||||||| |||||| ||||| ||||||| || ||||||||||| |||||||||||||| |
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| T |
6859 |
gaagagagtcaaattcatccccacagctggagcccctaccaccacacgagcaccttccttaat |
6921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 15385883 - 15385945
Alignment:
| Q |
163 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaat |
225 |
Q |
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| T |
15385883 |
gaagagagtcaaattcatccccacagctggagcccctaccaccacacgagcaccttccttaat |
15385945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 24325221 - 24325160
Alignment:
| Q |
163 |
gaagagagtcagattcattcccactcctggagcaccaaccaccacacgcgcaccttccttaa |
224 |
Q |
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||||||||||| |||||| ||||| ||||| | || ||||||||||| ||||||||||||| |
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| T |
24325221 |
gaagagagtcaaattcatccccacagctggaacccctaccaccacacgagcaccttccttaa |
24325160 |
T |
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