View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_120 (Length: 239)

Name: NF3173_low_120
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_120
NF3173_low_120
[»] chr1 (5 HSPs)
chr1 (60-145)||(23620347-23620429)
chr1 (60-145)||(23651692-23651774)
chr1 (60-145)||(23737126-23737208)
chr1 (60-145)||(23706528-23706611)
chr1 (178-211)||(23706056-23706089)
[»] chr3 (1 HSPs)
chr3 (60-117)||(1922919-1922976)
[»] chr4 (1 HSPs)
chr4 (60-108)||(48432415-48432463)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 23620347 - 23620429
Alignment:
Q  60 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaagaggaagaagacttgggtcaaccatatgat 145  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  23620347 gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaagag---gaagacttgggtcaaccatatgat 23620429  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 23651692 - 23651774
Alignment:
Q  60 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaagaggaagaagacttgggtcaaccatatgat 145  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  23651692 gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaagag---gaagacttgggtcaaccatatgat 23651774  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 23737126 - 23737208
Alignment:
Q  60 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaagaggaagaagacttgggtcaaccatatgat 145  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  23737126 gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaagag---gaagacttgggtcaaccatatgat 23737208  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 23706611 - 23706528
Alignment:
Q  60 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaagaggaagaagacttgggtc-aaccatatgat 145  Q
    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  23706611 gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaagagg---aagacttgggtcaaaccatatgat 23706528  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 23706089 - 23706056
Alignment:
Q  178 aaatacagcacacaccacacatatgcaaataaca 211  Q
    ||||||||||||||||||||||||||||||||||    
T  23706089 aaatacagcacacaccacacatatgcaaataaca 23706056  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 1922976 - 1922919
Alignment:
Q  60 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaaga 117  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  1922976 gtaattcagagtttacatctgacaaatgacattccctagtgagtgaaaaatgaaaaga 1922919  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 48432415 - 48432463
Alignment:
Q  60 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaa 108  Q
    |||||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  48432415 gtaattcatagtgtgcatctgacaaataacattccctagtgagtgaaaa 48432463  T

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