View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_126 (Length: 236)
Name: NF3173_low_126
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_126 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22921395 - 22921615
Alignment:
| Q |
1 |
gtagggaaatagagaaagacatgtgtaaggtgatgacgtaaaagatatatcttttcaaaaatttgtgttccaaattccaatagcatttctaaagctcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22921395 |
gtagggaaatagagaaagacatgtgtaaggtgatgacgtaaaagatatatcttttcaaaaatttgtgttccaaattccaatagcatttctaaagctcaga |
22921494 |
T |
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| Q |
101 |
cgatgtggaagatgatatacacaacaaataaataaatttggggttactgagttgcattgcatgatcttcctat--taatgtgtccttttgtgggtcccac |
198 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
22921495 |
cgatgtggaagatgatatacacaac----aaataaatttggggttactgagttgcattgcatgatcttcctattataacgtgtccttttgtgggtcccac |
22921590 |
T |
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| Q |
199 |
aattcaattttccacgaaaatcttg |
223 |
Q |
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||||||||||||| ||||||||||| |
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| T |
22921591 |
aattcaattttcctcgaaaatcttg |
22921615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22970404 - 22970184
Alignment:
| Q |
1 |
gtagggaaatagagaaagacatgtgtaaggtgatgacgtaaaagatatatcttttcaaaaatttgtgttccaaattccaatagcatttctaaagctcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22970404 |
gtagggaaatagagaaagacatgtgtaaggtgatgacgtaaaagatatatcttttcaaaaatttgtgttccaaattccaatagcatttctaaagctcaga |
22970305 |
T |
|
| Q |
101 |
cgatgtggaagatgatatacacaacaaataaataaatttggggttactgagttgcattgcatgatcttcctat--taatgtgtccttttgtgggtcccac |
198 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
22970304 |
cgatgtggaagatgatatacacaacaaat----aaatttggggttactgagttgcattgcatgatcttcctattataacgtgtccttttgtgggtcccac |
22970209 |
T |
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| Q |
199 |
aattcaattttccacgaaaatcttg |
223 |
Q |
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||||||||||||| ||||||||||| |
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| T |
22970208 |
aattcaattttcctcgaaaatcttg |
22970184 |
T |
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Back To:
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