View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_127 (Length: 236)

Name: NF3173_low_127
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_127
NF3173_low_127
[»] chr4 (5 HSPs)
chr4 (16-236)||(16659157-16659377)
chr4 (98-235)||(45179458-45179595)
chr4 (87-231)||(18390988-18391131)
chr4 (16-189)||(19339093-19339266)
chr4 (160-207)||(36647885-36647932)
[»] chr3 (4 HSPs)
chr3 (16-236)||(33284891-33285111)
chr3 (16-236)||(34011366-34011586)
chr3 (16-236)||(4188017-4188237)
chr3 (161-210)||(48101830-48101879)
[»] scaffold0163 (1 HSPs)
scaffold0163 (16-236)||(33383-33603)
[»] chr5 (1 HSPs)
chr5 (18-236)||(25040483-25040693)
[»] chr8 (3 HSPs)
chr8 (18-236)||(38616512-38616730)
chr8 (95-141)||(32309607-32309653)
chr8 (152-233)||(36038747-36038828)
[»] chr1 (3 HSPs)
chr1 (161-210)||(9934548-9934597)
chr1 (153-233)||(16090308-16090388)
chr1 (98-214)||(19328833-19328949)
[»] chr6 (1 HSPs)
chr6 (98-177)||(16592339-16592418)
[»] scaffold0169 (1 HSPs)
scaffold0169 (160-207)||(20281-20328)
[»] chr7 (1 HSPs)
chr7 (160-207)||(7082548-7082595)
[»] scaffold0134 (1 HSPs)
scaffold0134 (98-204)||(36319-36425)
[»] scaffold0009 (1 HSPs)
scaffold0009 (101-174)||(29600-29673)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 16659377 - 16659157
Alignment:
16 acattctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattccatcaataatagtttgttaccttttgatattctacat 115  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
16659377 acattctcagttttgtcattcatgtcctcttggtaaacacattaaattgacttttacaaattccatcaataatagtttgttaccttttgatattctacat 16659278  T
116 agtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccattt 215  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16659277 agtgatgtatggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccattt 16659178  T
216 cacataaatctcaagtttatc 236  Q
    |||||||||||||||||||||    
16659177 cacataaatctcaagtttatc 16659157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 45179458 - 45179595
Alignment:
98 ccttttgatattctacatagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttt 197  Q
    |||||||||||  ||||||||||||||||| |||||||  |  | || |||  ||||||||||||||||||  | ||||||||||||||||| ||||  |    
45179458 ccttttgatatcttacatagtgatgtatggacatctcccgtattgagttcgttaggtcacaaatattatgtgctttttttggataactattcaaattact 45179557  T
198 tgtggacattccccatttcacataaatctcaagtttat 235  Q
    ||||||| || || || ||||| |||||||||||||||    
45179558 tgtggacttttccaatctcacaaaaatctcaagtttat 45179595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 18390988 - 18391131
Alignment:
87 atagtttgttaccttttgatattctacatagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataacta 186  Q
    |||| ||||| |||||||||||| ||||||| ||||||||| ||||| |  |  |||| ||   ||||||||||||||||||||| |||||| || | ||    
18390988 atagcttgttgccttttgatattttacatagcgatgtatggacatcttcggtcttaagttcattaggtcacaaatattatgttttgtttttgtatgatta 18391087  T
187 ttctaattttttgtggacattccccatttcacataaatctcaagt 231  Q
     || |||||||| |||||||| ||||||||||| |||||||||||    
18391088 ctcaaatttttt-tggacatttcccatttcacaaaaatctcaagt 18391131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 19339266 - 19339093
Alignment:
16 acattctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattc-catcaataatagtttgttaccttttgatattctaca 114  Q
    |||||||||  ||||| | ||||||| ||||||||||||  ||||||||||||| | |||||| ||| ||||  |||||||| || ||| ||||| ||||    
19339266 acattctcatatttgtcactcatgtcctcttggtaaacatgttaaattgcctttcatgaattctcat-aatagaagtttgttgccatttcatattttaca 19339168  T
115 tagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattc 189  Q
    ||||||||||||| | |||||  || |||| ||    |||||||| ||||||||| | || |||||||| |||||    
19339167 tagtgatgtatggacctctcctgttttaagttcagttggtcacaattattatgttcttttcttggataattattc 19339093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 36647885 - 36647932
Alignment:
160 atattatgttttatttttggataactattctaattttttgtggacatt 207  Q
    |||||||||||| ||| ||||| |||| ||||||||||||||||||||    
36647885 atattatgttttgtttgtggatgactactctaattttttgtggacatt 36647932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 33284891 - 33285111
Alignment:
16 acattctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattccatcaataatagtttgttaccttttgatattctacat 115  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
33284891 acattctcagttttgtcattcatgtcctcttggtaaacacattaaattgtcttttacaaattccatcaataatagtttgttaccttttgatattctacat 33284990  T
116 agtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccattt 215  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33284991 agtgatgtatggacatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccattt 33285090  T
216 cacataaatctcaagtttatc 236  Q
    |||||||||||||||||||||    
33285091 cacataaatctcaagtttatc 33285111  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 34011366 - 34011586
Alignment:
16 acattctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattc-catcaataatagtttgttaccttttgatattctaca 114  Q
    |||||||||  ||||| ||||||||| ||||||||||||  |||||||| |||| | |||||| ||| ||||  |||||||| || ||||||||| ||||    
34011366 acattctcatatttgtcattcatgtcctcttggtaaacatgttaaattgtctttcatgaattctcat-aatagaagtttgttgccatttgatattttaca 34011464  T
115 tagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccatt 214  Q
    ||||||||||||| | ||||| ||| |||| ||    |||||||||||||||||| | || |||||||| ||||| |||||||||||||| || || ||     
34011465 tagtgatgtatggacctctcctattttaagttcagttggtcacaaatattatgttcttttcttggataattattcaaattttttgtggacttttccaatg 34011564  T
215 tcacataaatctcaagtttatc 236  Q
    ||||||||||| ||||||||||    
34011565 tcacataaatcccaagtttatc 34011586  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4188237 - 4188017
Alignment:
16 acattctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattc-catcaataatagtttgttaccttttgatattctaca 114  Q
    |||||||||  ||||| ||||||||| ||||||||||||  ||||||||  ||| | |||||| ||| ||||  |||||||| || ||||||||| ||||    
4188237 acattctcatatttgtcattcatgtcctcttggtaaacatgttaaattgtttttcatgaattctcat-aatagaagtttgttgccatttgatattttaca 4188139  T
115 tagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccatt 214  Q
    |||||||||| || | |||||| || |||| ||    |||||||||||||||||| | || |||||||| ||||| |||||||||||||| || || ||     
4188138 tagtgatgtacggacctctccagttttaagttcagttggtcacaaatattatgttcttttcttggataattattcaaattttttgtggacttttccaatg 4188039  T
215 tcacataaatctcaagtttatc 236  Q
    ||||||||||| ||||||||||    
4188038 tcacataaatcccaagtttatc 4188017  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 48101879 - 48101830
Alignment:
161 tattatgttttatttttggataactattctaattttttgtggacattccc 210  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||    
48101879 tattatgttttatttttggatgattattctgattttttgtggacattccc 48101830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 33603 - 33383
Alignment:
16 acattctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattccatcaataatagtttgttaccttttgatattctacat 115  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
33603 acattcttagttttgtcattcatgtcctcttggtaaacacattaaattgccttttacaaattccatcaataatagtttgttaccttttgatattctacat 33504  T
116 agtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccattt 215  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
33503 agtgatgtatggccatctccaattttaagctcgacaggtcacaaatattatgttttatttttggataactgttctaattttttgtggacattccccattt 33404  T
216 cacataaatctcaagtttatc 236  Q
    |||||||||||||||||||||    
33403 cacataaatctcaagtttatc 33383  T

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Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 25040483 - 25040693
Alignment:
18 attctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattccatcaataatagtttgttaccttttgatattctacatag 117  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| |||| |||||| | || || |||||| |||||||       ||    
25040483 attctcagttttatcattcatgtcctcttggtaaacacattaaattaccttttacgtattctatcaatgaaagcttattacctgttgatat-------ag 25040575  T
118 tgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccatttca 217  Q
    |||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
25040576 tgatgtatggacatctcccattttaagctcgacatgtcacaaatattatgttttactcttggataactattctaattttttgtggacatttcccatttca 25040675  T
218 cataaatctcaagtttatc 236  Q
    ||| |||||||||||||||    
25040676 cat-aatctcaagtttatc 25040693  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 38616730 - 38616512
Alignment:
18 attctcagttttgtgattcatgtcatcttggtaaacacattaaattgccttttacgaattc-catcaataatagtttgttaccttttgatattctacata 116  Q
    |||||||  ||||| ||||||||| ||||||||||||  ||||||||||||| | |||||| ||| ||||  |||||||| || ||||||||| ||||||    
38616730 attctcatatttgtcattcatgtcctcttggtaaacatgttaaattgcctttcatgaattctcat-aatagaagtttgttgccatttgatattttacata 38616632  T
117 gtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccatttc 216  Q
    ||||||||||| | ||||   || |||| ||    |||||||||||||||||| | || |||||||| ||||| |||||||||||||| || || || ||    
38616631 gtgatgtatggacctctcgtgttttaagttcagttggtcacaaatattatgttcttttcttggataattattcaaattttttgtggacttttccaatgtc 38616532  T
217 acataaatctcaagtttatc 236  Q
    ||||||||| ||||||||||    
38616531 acataaatcccaagtttatc 38616512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 32309653 - 32309607
Alignment:
95 ttaccttttgatattctacatagtgatgtatgggcatctccaattct 141  Q
    ||||||||||||||| ||||||||||| ||||| |||| ||||||||    
32309653 ttaccttttgatattgtacatagtgatatatggacatcaccaattct 32309607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 36038747 - 36038828
Alignment:
152 ggtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccatttcacataaatctcaagttt 233  Q
    ||||| |||||||||||  | | ||||||| ||||||| ||||| |||||||| ||||| |||||||| ||||  |||||||    
36038747 ggtcataaatattatgtgctctatttggatgactattcaaatttcttgtggactttcccaatttcacaaaaattgcaagttt 36038828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 9934597 - 9934548
Alignment:
161 tattatgttttatttttggataactattctaattttttgtggacattccc 210  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||    
9934597 tattatgttttatttttggatgattattctgattttttgtggacattccc 9934548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 16090308 - 16090388
Alignment:
153 gtcacaaatattatgttttatttttggataactattctaattttttgtggacattccccatttcacataaatctcaagttt 233  Q
    |||| |||||||||||  | | ||||||| ||||||| ||||| |||||||| ||||| |||||||| ||||| |||||||    
16090308 gtcataaatattatgtgctctatttggatgactattcgaatttcttgtggactttcccaatttcacaaaaatcgcaagttt 16090388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 19328833 - 19328949
Alignment:
98 ccttttgatattctacatagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttt 197  Q
    |||||||||||||| ||||||||| | ||| | ||||||||| |||| ||  |  |||| ||||||||||| |||||||| ||| | | | | ||||||     
19328833 ccttttgatattctgcatagtgatttgtggacgtctccaattttaagttccgctagtcataaatattatgtcttatttttagatgattttacaaattttc 19328932  T
198 tgtggacattccccatt 214  Q
    ||||||| || ||||||    
19328933 tgtggacttttcccatt 19328949  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 16592339 - 16592418
Alignment:
98 ccttttgatattctacatagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttattttt 177  Q
    |||||||||||| ||||||||||| ||||| | ||||||||| |||| ||  | ||||| ||||||||||| ||||||||    
16592339 ccttttgatattttacatagtgatttatggacgtctccaattttaagttctgctggtcataaatattatgtcttattttt 16592418  T

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Target: scaffold0169 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 20281 - 20328
Alignment:
160 atattatgttttatttttggataactattctaattttttgtggacatt 207  Q
    |||||||||||| ||| ||||| |||| ||||||||||||||||||||    
20281 atattatgttttgtttgtggatgactactctaattttttgtggacatt 20328  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 7082548 - 7082595
Alignment:
160 atattatgttttatttttggataactattctaattttttgtggacatt 207  Q
    |||||||||||| ||| ||||| |||| ||||||||||||||||||||    
7082548 atattatgttttgtttgtggatgactactctaattttttgtggacatt 7082595  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 36319 - 36425
Alignment:
98 ccttttgatattctacatagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatttttggataactattctaattttt 197  Q
    |||||||||||| ||||||||||| | ||| | ||||||||| |||| ||  | ||||| |||||||||||  ||||||| ||| | ||| | ||||| |    
36319 ccttttgatattttacatagtgatttgtggacgtctccaattttaagttctgctggtcataaatattatgtcctatttttagatgattatacaaatttct 36418  T
198 tgtggac 204  Q
    |||||||    
36419 tgtggac 36425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 29600 - 29673
Alignment:
101 tttgatattctacatagtgatgtatgggcatctccaattctaagctcgacaggtcacaaatattatgttttatt 174  Q
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29600 tttgatattttacatagtgatttatggacgtctccaattttaagttctgctggtcataaatattatgtattatt 29673  T

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