View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_146 (Length: 206)
Name: NF3173_low_146
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_146 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 47250240 - 47250410
Alignment:
| Q |
19 |
taggttgataatcaaaatcaggaagattgagatcggaaaattcacctaaaacaactctctgtcttttgggaaccatgacttgtggtggttgttgaatggt |
118 |
Q |
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| T |
47250240 |
taggttgataatcaaaatcaggaagattgagatcggaaaattcacctaaaacaactctctgtcttttgggaaccatgacttgtggtggttgttgaatggt |
47250339 |
T |
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| Q |
119 |
gttggctctcttctttgaggcacgagtctccatcttac-agagtgtagtgaagtgtgttgctctgaaagaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
47250340 |
gttggctctcttctttgaggcacgagtctccatctttcaagagtgtagtgaagtgtgttgctctgaaagaa |
47250410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 47243250 - 47243404
Alignment:
| Q |
19 |
taggttgataatcaaaatcaggaagattgagatcggaaaattcacctaaaacaactctctgtcttttgggaaccatgacttgtggtggttgttgaatggt |
118 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||| |||| |
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| T |
47243250 |
taggttggtaatcaaaatcaggaagattgagatctggaaattcacccaaaacaaccctctgtcttttgggaacgatgacatgtggaggttgttgattggt |
47243349 |
T |
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| Q |
119 |
gttggctctcttctttgaggcacgagtctccatcttacagagtgtagtgaagtgt |
173 |
Q |
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| T |
47243350 |
gttggctcttttctttgatgcgcgagtctccatctttcagagtgtagtgaagtgt |
47243404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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