View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_147 (Length: 205)

Name: NF3173_low_147
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_147
NF3173_low_147
[»] chr5 (6 HSPs)
chr5 (22-60)||(19237773-19237811)
chr5 (30-60)||(16569540-16569570)
chr5 (19-60)||(23622613-23622654)
chr5 (19-60)||(29955453-29955494)
chr5 (19-60)||(36045027-36045068)
chr5 (28-56)||(7871937-7871965)
[»] chr2 (4 HSPs)
chr2 (18-60)||(11818432-11818474)
chr2 (19-56)||(23379978-23380015)
chr2 (19-60)||(26501264-26501305)
chr2 (19-56)||(30848315-30848352)
[»] scaffold0341 (2 HSPs)
scaffold0341 (19-56)||(1929-1966)
scaffold0341 (19-56)||(9585-9622)
[»] chr8 (4 HSPs)
chr8 (19-60)||(2246710-2246751)
chr8 (19-56)||(13700129-13700166)
chr8 (19-56)||(22897971-22898008)
chr8 (28-60)||(19382633-19382665)
[»] chr3 (5 HSPs)
chr3 (19-56)||(4479866-4479903)
chr3 (19-56)||(14485654-14485691)
chr3 (19-65)||(36144836-36144882)
chr3 (19-56)||(16877963-16878000)
chr3 (19-52)||(45004299-45004332)
[»] chr1 (4 HSPs)
chr1 (19-60)||(3603510-3603551)
chr1 (19-56)||(6507904-6507941)
chr1 (30-60)||(5185261-5185291)
chr1 (19-52)||(28385221-28385254)
[»] chr7 (5 HSPs)
chr7 (19-56)||(29961970-29962007)
chr7 (19-56)||(30502616-30502653)
chr7 (19-60)||(33611022-33611063)
chr7 (19-60)||(42510026-42510067)
chr7 (19-60)||(48770222-48770263)
[»] chr6 (3 HSPs)
chr6 (19-60)||(23508839-23508880)
chr6 (19-55)||(6695689-6695725)
chr6 (19-55)||(35087841-35087877)
[»] chr4 (4 HSPs)
chr4 (19-60)||(13686118-13686159)
chr4 (19-56)||(30190940-30190977)
chr4 (19-60)||(37061038-37061079)
chr4 (19-55)||(18878284-18878320)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 19237773 - 19237811
Alignment:
Q  22 tgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  19237773 tgaacctcttattattaatgaaatgttataagcatattt 19237811  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 16569570 - 16569540
Alignment:
Q  30 ttattattaatgaaatgttataagcatattt 60  Q
    |||||||||||||||||||||||||||||||    
T  16569570 ttattattaatgaaatgttataagcatattt 16569540  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 23622613 - 23622654
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  23622613 tattgaatctcttattattaatgaaatgctataagcatattt 23622654  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 29955494 - 29955453
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| || ||||||||||||||||||||||| |||||||    
T  29955494 tattgaatcttttattattaatgaaatgttataatcatattt 29955453  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36045027 - 36045068
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  36045027 tattgaatctcttattattaatgaaatgctataagcatattt 36045068  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 7871965 - 7871937
Alignment:
Q  28 tattattattaatgaaatgttataagcat 56  Q
    |||||||||||||||||||||||||||||    
T  7871965 tattattattaatgaaatgttataagcat 7871937  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 11818474 - 11818432
Alignment:
Q  18 atattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  11818474 atattgaacctcttattattaatgaaatgctataagcatattt 11818432  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 23379978 - 23380015
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  23379978 tattgaaactattattattaatgaaatgttataagcat 23380015  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 26501305 - 26501264
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  26501305 tattgaacctattattataaatgaaatgctataaacatattt 26501264  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 30848315 - 30848352
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  30848315 tattgaatctattattattaatgaaatgctataagcat 30848352  T

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Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 1966 - 1929
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    |||||||||| |||||||||||||||||||||||||||    
T  1966 tattgaacctgttattattaatgaaatgttataagcat 1929  T

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Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9622 - 9585
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9622 tattgaacctgttattattaatgaaatgttataagcat 9585  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 2246751 - 2246710
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  2246751 tattgaacctcttattattaatgaaatgctataagcatattt 2246710  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 13700166 - 13700129
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  13700166 tattgaaactattattattaatgaaatgctataagcat 13700129  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 22897971 - 22898008
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  22897971 tattgaaactattattattaatgaaatgctataagcat 22898008  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 19382665 - 19382633
Alignment:
Q  28 tattattattaatgaaatgttataagcatattt 60  Q
    ||||||||||||||||||| |||||||||||||    
T  19382665 tattattattaatgaaatgctataagcatattt 19382633  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 4479903 - 4479866
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4479903 tattgaatctattattattaatgaaatgttataagcat 4479866  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 14485654 - 14485691
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    |||||||||||||||||||||||||||| |||||||||    
T  14485654 tattgaacctattattattaatgaaatgctataagcat 14485691  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 36144836 - 36144882
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatatttgcttt 65  Q
    |||||||||| || |||||||||||||| ||||||||||||| ||||    
T  36144836 tattgaacctcttgttattaatgaaatgctataagcatattttcttt 36144882  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 16878000 - 16877963
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  16878000 tattgaaactattattattaatgaaatgctataagcat 16877963  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 45004299 - 45004332
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataa 52  Q
    |||||||||||||||||||||||||||| |||||    
T  45004299 tattgaacctattattattaatgaaatgctataa 45004332  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 3603551 - 3603510
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  3603551 tattgaacctcttattattaatgaaatgttataaacatattt 3603510  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 6507941 - 6507904
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6507941 tattgaacctgttattattaatgaaatgttataagcat 6507904  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 5185291 - 5185261
Alignment:
Q  30 ttattattaatgaaatgttataagcatattt 60  Q
    |||||||||||||||||||||||||||||||    
T  5185291 ttattattaatgaaatgttataagcatattt 5185261  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 28385221 - 28385254
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataa 52  Q
    ||||||| ||||||||||||||||||||||||||    
T  28385221 tattgaaactattattattaatgaaatgttataa 28385254  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 29961970 - 29962007
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29961970 tattgaatctattattattaatgaaatgctataagcat 29962007  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 30502616 - 30502653
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| || |||||||||||||||||||||||||||    
T  30502616 tattgaaactcttattattaatgaaatgttataagcat 30502653  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33611063 - 33611022
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  33611063 tattgaacctcttattattaataaaatgctataagcatattt 33611022  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 42510067 - 42510026
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||    
T  42510067 tattgaaactattatcattaatgaaatgttataagcacattt 42510026  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48770222 - 48770263
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  48770222 tattgaaactcttattattaatgaaatgctataagcatattt 48770263  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 23508880 - 23508839
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    |||||||||| |||||||||||||||||  ||||||||||||    
T  23508880 tattgaacctcttattattaatgaaatgcaataagcatattt 23508839  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 6695689 - 6695725
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagca 55  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6695689 tattgaaactattatcattaatgaaatgttataagca 6695725  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 35087877 - 35087841
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagca 55  Q
    ||||||| | |||||||||||||||||||||||||||    
T  35087877 tattgaaacgattattattaatgaaatgttataagca 35087841  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 13686118 - 13686159
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  13686118 tattgaatctcttattattaatgaaatgctataagcatattt 13686159  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 30190977 - 30190940
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcat 56  Q
    ||||||| || |||||||||||||||||||||||||||    
T  30190977 tattgaaactcttattattaatgaaatgttataagcat 30190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37061079 - 37061038
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagcatattt 60  Q
    ||||||| || |||||||||| ||||||||||||||||||||    
T  37061079 tattgaatctcttattattaacgaaatgttataagcatattt 37061038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 18878284 - 18878320
Alignment:
Q  19 tattgaacctattattattaatgaaatgttataagca 55  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  18878284 tattgaaactattattattaatgaaatgctataagca 18878320  T

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