View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_15 (Length: 528)

Name: NF3173_low_15
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_15
NF3173_low_15
[»] chr3 (5 HSPs)
chr3 (1-526)||(49700736-49701264)
chr3 (113-155)||(44745943-44745985)
chr3 (114-155)||(30852117-30852158)
chr3 (113-151)||(12761589-12761627)
chr3 (113-155)||(43303830-43303872)
[»] chr1 (6 HSPs)
chr1 (113-155)||(6127948-6127990)
chr1 (455-522)||(2242434-2242501)
chr1 (117-155)||(34228946-34228984)
chr1 (113-155)||(36428785-36428827)
chr1 (117-156)||(44486123-44486162)
chr1 (113-155)||(31605809-31605851)
[»] chr4 (6 HSPs)
chr4 (114-155)||(25414177-25414218)
chr4 (114-155)||(55256161-55256202)
chr4 (113-155)||(33867375-33867417)
chr4 (114-155)||(46295170-46295211)
chr4 (113-155)||(2732067-2732109)
chr4 (113-155)||(26356890-26356932)
[»] chr8 (4 HSPs)
chr8 (114-154)||(3078607-3078647)
chr8 (113-156)||(27557605-27557648)
chr8 (113-155)||(11793482-11793524)
chr8 (118-151)||(35475542-35475575)
[»] chr7 (5 HSPs)
chr7 (113-156)||(48125136-48125179)
chr7 (116-155)||(38374563-38374602)
chr7 (113-155)||(45559264-45559306)
chr7 (114-146)||(12877223-12877255)
chr7 (113-145)||(35328836-35328868)
[»] chr2 (6 HSPs)
chr2 (113-155)||(21213842-21213884)
chr2 (116-155)||(27967113-27967152)
chr2 (113-155)||(6099480-6099522)
chr2 (113-151)||(41908599-41908637)
chr2 (114-155)||(32106639-32106680)
chr2 (115-155)||(30359726-30359766)
[»] chr6 (4 HSPs)
chr6 (113-154)||(23242060-23242101)
chr6 (117-155)||(3869768-3869806)
chr6 (114-156)||(24333987-24334029)
chr6 (123-152)||(24762379-24762408)
[»] chr5 (2 HSPs)
chr5 (117-155)||(902234-902272)
chr5 (113-150)||(28131219-28131256)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 49701264 - 49700736
Alignment:
Q  1 ttatgactaactcaagtcaatggatgggataaaactctcctgacaattannnnnnnncattcttgaaactcaaattaatttgccacattacttaacaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  49701264 ttatgactaactcaagtcaatggatgggataaaactctcctgacaattattttttttcattcttgaaactcaaattaatttgccacattacttaacaaaa 49701165  T
Q  101 gnnnnnnnnnnn--gaagaagccaaactagcccaccaaaattggcaccggggagaattcat-acttaagaaaatttaaacagtagaacttctgaaaaatt 197  Q
    |             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49701164 gtttttttttttttgaagaagccaaactagcccaccaaaattggcaccggggagaattcattacttaagaaaatttaaacagtagaacttctgaaaaatt 49701065  T
Q  198 gaaatgcataagctaatttcaaaatattattttaaaaactaatagtcagtttggagtttgatgttggtgaagtctacatcagtgtgatagaaactgctta 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49701064 gaaatgcataagctaatttcaaaatattattttaaaaactaatagtcagtgtggagtttgatgttggtgaagtctacatcagtgtgatagaaactgctta 49700965  T
Q  298 actagtataactaaattgaaagcannnnnnncttcataaaagcagtaatgaatgatgtataaaacagctttaattggaaacatatcttatcaaaaaataa 397  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49700964 actagtataactaaattgaaagcatttttttcttcataaaagcagtaatgaatgatgtataaaacagctttaattggaaacatatcttatcaaaaaataa 49700865  T
Q  398 aatgaagtaagagattaatggggtatagtttcttaccgcggcaccggtgacaaaaacataaaagtctgttggtgcttcattatccaaaatcacatcttcc 497  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49700864 aatgaagtaagagattaatggggtatagtttcctaccgcggcaccggtgacaaaaatataaaagtctgttggtgcttcattatccaaaatcacatcttcc 49700765  T
Q  498 tttggaggaaaatactccgccttcatctc 526  Q
    |||||||||||||||||||||||||||||    
T  49700764 tttggaggaaaatactccgccttcatctc 49700736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 44745943 - 44745985
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  44745943 gaagaagccaaactagcctaccaaaattggcactggggagaat 44745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 30852117 - 30852158
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  30852117 aagaagctaaactagcccaccaaaattggtaccggggagaat 30852158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 12761627 - 12761589
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccgggga 151  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  12761627 gaagaagcaaaactagcccacctaaattggcaccgggga 12761589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 43303872 - 43303830
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||||||||||| | ||| ||||||||||||||    
T  43303872 gaagaagccaaactagcccaccgatattagcaccggggagaat 43303830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 6127948 - 6127990
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6127948 gaagaagccaaactagcccaccaaaattggcaccggggagaat 6127990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 522
Target Start/End: Original strand, 2242434 - 2242501
Alignment:
Q  455 ataaaagtctgttggtgcttcattatccaaaatcacatcttcctttggaggaaaatactccgccttca 522  Q
    ||||||||||||||||| |||||| | ||| |  ||||||||||||||||||||| |||| |||||||    
T  2242434 ataaaagtctgttggtgattcattctgcaagactacatcttcctttggaggaaaaaactcagccttca 2242501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 34228984 - 34228946
Alignment:
Q  117 aagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  34228984 aagccaaactagcccaccaaaattggcaccggagagaat 34228946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 36428827 - 36428785
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  36428827 gaagaagcaaaactagcccacccaaattggcaccggggagaat 36428785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 44486123 - 44486162
Alignment:
Q  117 aagccaaactagcccaccaaaattggcaccggggagaatt 156  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  44486123 aagccaaactaacccaccgaaattggcaccggggagaatt 44486162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 31605809 - 31605851
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||| || ||||||||||||| ||||||||||||||||||||    
T  31605809 gaagaggctaaactagcccacccaaattggcaccggggagaat 31605851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 25414177 - 25414218
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  25414177 aagaagccaaactaacccaccaaaattggcaccggggagaat 25414218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 55256161 - 55256202
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  55256161 aagaagccaaactagcccaccaaaattggcaccgaggagaat 55256202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 33867417 - 33867375
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  33867417 gaagaaaccaaactagcccaccgaaattggcaccggggagaat 33867375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 46295211 - 46295170
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  46295211 aagaagctaaactagcccacccaaattggcaccggggagaat 46295170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 2732109 - 2732067
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  2732109 gaagaagctaaactagcccacccaaattggcaccggagagaat 2732067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 26356932 - 26356890
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||| ||||||||||||| |||||||||| |||||||||    
T  26356932 gaagaagctaaactagcccacctaaattggcactggggagaat 26356890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 3078647 - 3078607
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaa 154  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  3078647 aagaagctaaactagcccaccaaaattggcaccggggagaa 3078607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 27557605 - 27557648
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaatt 156  Q
    ||||||||||||||| |||||| |||||||||||||||||||||    
T  27557605 gaagaagccaaactaccccaccgaaattggcaccggggagaatt 27557648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 11793482 - 11793524
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||| ||||||||||||| |||||||||||||| |||||    
T  11793482 gaagaagctaaactagcccacccaaattggcaccgggaagaat 11793524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 35475542 - 35475575
Alignment:
Q  118 agccaaactagcccaccaaaattggcaccgggga 151  Q
    ||||||||||||||||| ||||||||||||||||    
T  35475542 agccaaactagcccaccgaaattggcaccgggga 35475575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 48125136 - 48125179
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaatt 156  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  48125136 gaagaagccaaactagcccaccgaaattggcaccggggaaaatt 48125179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 38374563 - 38374602
Alignment:
Q  116 gaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  38374563 gaagctaaactagcccacctaaattggcaccggggagaat 38374602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 45559306 - 45559264
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||||| |||| || |||||||||||||||||||||||||||    
T  45559306 gaagaagtcaaattaacccaccaaaattggcaccggggagaat 45559264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 12877255 - 12877223
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcacc 146  Q
    ||||||||||||||||||||| |||||||||||    
T  12877255 aagaagccaaactagcccaccgaaattggcacc 12877223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 35328836 - 35328868
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcac 145  Q
    ||||||||||||||||||||| |||||||||||    
T  35328836 gaagaagccaaactagcccactaaaattggcac 35328868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 21213884 - 21213842
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  21213884 gaagaagcaaaactagcccacctaaattggcaccggggagaat 21213842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 27967113 - 27967152
Alignment:
Q  116 gaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  27967113 gaagccaaactaacccaccaaaattgccaccggggagaat 27967152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 6099480 - 6099522
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  6099480 gaagaagccaaactagcccaccgatattggcagcggggagaat 6099522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 41908599 - 41908637
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccgggga 151  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  41908599 gaagaagctaaactagcccacccaaattggcaccgggga 41908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 32106680 - 32106639
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  32106680 aagaagccaaactagcccactgaaattggcaccggagagaat 32106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 30359766 - 30359726
Alignment:
Q  115 agaagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    |||||| ||||||||||||| |||||||||| |||||||||    
T  30359766 agaagctaaactagcccacccaaattggcactggggagaat 30359726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 23242101 - 23242060
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccggggagaa 154  Q
    |||||||| ||||||||||||| |||||||||||||||||||    
T  23242101 gaagaagctaaactagcccacccaaattggcaccggggagaa 23242060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 3869806 - 3869768
Alignment:
Q  117 aagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  3869806 aagccaaactatcccaccaatattggcaccggggagaat 3869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 24333987 - 24334029
Alignment:
Q  114 aagaagccaaactagcccaccaaaattggcaccggggagaatt 156  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||    
T  24333987 aagaagctaaactagcccacccaaattggcaccggtgagaatt 24334029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 24762379 - 24762408
Alignment:
Q  123 aactagcccaccaaaattggcaccggggag 152  Q
    ||||||||||||||||||||||||||||||    
T  24762379 aactagcccaccaaaattggcaccggggag 24762408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 902234 - 902272
Alignment:
Q  117 aagccaaactagcccaccaaaattggcaccggggagaat 155  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  902234 aagccaaactagcccaccaaaattggcattggggagaat 902272  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 28131256 - 28131219
Alignment:
Q  113 gaagaagccaaactagcccaccaaaattggcaccgggg 150  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  28131256 gaagaagctaaactagcccaccaaaattggcatcgggg 28131219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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