View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_17 (Length: 509)
Name: NF3173_low_17
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 40063601 - 40063121
Alignment:
| Q |
19 |
ctaccatcctttcatcccatacttttctcggttcaccccctcactccactattgcaaataaatcatcttaatacccacataacaattcatatcatccttc |
118 |
Q |
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| T |
40063601 |
ctaccatcctttcatcccatacttttctctgttcacccc-tcactccactattgcaaataaaccatcttaatacccacataacaattcatatcatccttc |
40063503 |
T |
|
| Q |
119 |
accattctcattaatagt-aatagtatttctcatttacgcttcagtagtgttggtcacatccattgattcattgcgtgcgtcagtgtatatatatgtaag |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063502 |
accattctcattaatagttaatagtatttctcatttacgcttcagtagtgttggtcacatccattgattcattgcgtgcgtcagtgtatatatatgtaag |
40063403 |
T |
|
| Q |
218 |
taaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagtactctgttttcttttcttttctccatcatcatcatcaa-nn |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40063402 |
taaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagtactctgttttcttttctattctccatcatcatcatcaattt |
40063303 |
T |
|
| Q |
317 |
nnnnncccttatacacgtttttatcacatctattttttccttgtcagagaaaaaacagtttccttaatcttcataataactctatactacgtatctttca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063302 |
tttttcccttatacacgtttttatcacatctattttttccttgtcagagaaaaaacagtttccttaatcttcataataactctatactacgtatctttca |
40063203 |
T |
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| Q |
417 |
aacttcaaacgtcacaacccatttcataactcaacacaacaatttattatttattattacaacacagcacaaacccgcttca |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40063202 |
aacttcaaacgtcacaacccatttcataactcaacacaacaatttattatttattattacaacacagcacaaacccacttca |
40063121 |
T |
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