View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_24 (Length: 439)
Name: NF3173_low_24
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 48068662 - 48069075
Alignment:
| Q |
13 |
aatattgatatatttgatttgaaattttgaacccgatatgtactagtaccttgtgattgtttgactcttcaaaaaacaaacttcactatccttacctttg |
112 |
Q |
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| T |
48068662 |
aatattgatatatttgatttgaaattttaaacccgatatgtactagtaccttgtgattgtttgactcttcaaaaaacaaacttcactatccttacctttg |
48068761 |
T |
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| Q |
113 |
aatgaatttgaatattgaaaaacaaacaaataaataacagacagaagtaaccataatccaactatatataatattcaactgtattaggataagattggaa |
212 |
Q |
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| T |
48068762 |
aatgaatttgaatattgaaaaacaaacaaataaataacagacagaagtaaccataatccaactatatataatattcaactgtattaggataagattggaa |
48068861 |
T |
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| Q |
213 |
ttacgaataaggttgttttgagtgtaaataaataccagtaagttaatcatcccatagatcattaattggagtaacttataattagtagcagagccagcat |
312 |
Q |
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| T |
48068862 |
ttacgaataaggttgttttgagtgtaaataaataccagtaagttaatcatcccatagatcatt----ggagtaacttataattagtagcagagccagcat |
48068957 |
T |
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| Q |
313 |
tttaacttaaataatccataaatgcca----ggctttgacccatttctcggtgcaaaaataataggaacaacttcc----acccttgcatcagcaataag |
404 |
Q |
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| T |
48068958 |
tttaacttaaataatccataaatgccacagaggctttgacccattgctcggtgcaaaaataataggaacaacttctttctacccttgcatcagcaataag |
48069057 |
T |
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| Q |
405 |
aagctgcagattttgcaa |
422 |
Q |
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| T |
48069058 |
aagctgcagattttgcaa |
48069075 |
T |
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