View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_26 (Length: 427)
Name: NF3173_low_26
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 38038224 - 38038528
Alignment:
| Q |
12 |
atgaacatgaagtatgggccttgtatggggatgacgaggctggcacgcttggagcgtgctgtgaagcttggtttgaaccctccagaggaaatcgcggaac |
111 |
Q |
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| T |
38038224 |
atgaacatgaagtatgggccttgtatggggatgacgaggctggcacgcttggagcgtgctgtgaagcttggtttgaaccctccggaggaaatcgcggaac |
38038323 |
T |
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| Q |
112 |
tcttgaagagtggtaaagttcagcaagaatcactttgggacactcgcatttagaacgctgcttaaatgtaataat--------------------cttgt |
191 |
Q |
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| T |
38038324 |
tcttgaagagtggtaaagttcagcaagaatcactttgggacactcgcatttagaacgctgcttaaatgtaataatcttgttgtagcttcttctgacttgt |
38038423 |
T |
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| Q |
192 |
ttgtttgtttaggttttgcttagggaaaatcagtttcttgctgtgtcccctttccctg---gtagtagtattatgttttcttatgtgactcgaaatcttg |
288 |
Q |
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| T |
38038424 |
ttgtttgtttaggttttgcttagggaaaatcactttcttgctgtgtcccctttccctggtagtagtagtagtatgttttcttatgtgactcgatatcttg |
38038523 |
T |
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| Q |
289 |
ttgtt |
293 |
Q |
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||||| |
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| T |
38038524 |
ttgtt |
38038528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 38038530 - 38038605
Alignment:
| Q |
333 |
tgttctgttctgttcttatgctgttaattgtgcaattgatacatgttgtttgaggaagtaaattcgaagtcggata |
408 |
Q |
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| T |
38038530 |
tgttctgttctgttcttatgctgttaattgtgcaattgatacatgctgtttgagggagtaaattcgaagtcggata |
38038605 |
T |
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