View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_27 (Length: 422)
Name: NF3173_low_27
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 34676788 - 34676383
Alignment:
| Q |
1 |
ctcgttttcctgttagttgagttcataaaacacaccatcacnnnnnnnnngccttacagaatcactacactagtagcactaataacaagttgtttt-att |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
34676788 |
ctcgttttcctgttagttgagttcataaaacacaccatcacaaaaaaaaagccttacagaatcacta-----gtagcactaataacaagttgtttttatt |
34676694 |
T |
|
| Q |
100 |
atactaccatatcttttacacatgaaaagttcttacaaactctatatgagattgagacttgagagtgaccattaatatactttgtagtttcaactccatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676693 |
atactaccatatcttttacacatgaaaagttcttacaaactctatatgagattgagacttgagagtgaccattaatatactttgtagtttcaactccatc |
34676594 |
T |
|
| Q |
200 |
caaatccaaatatacatgatctttgtttctgtgtatttgattgtgacatgttgccaataaaaaactcaactgctcctgaatcctgatcctcactgacctc |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676593 |
caaatccaaatatacatgatctttgtttctgtgtatttgattgtgacatgttgccaataaaaaactcaactgctcctgaatcctgatcctcactgacctc |
34676494 |
T |
|
| Q |
300 |
acttcttctgtcaccagtgcctttattttagtgaaaattaatcacttcaaatggttactacatgtttaacccactttggtaattaaaataaaataggaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34676493 |
acttcttctgtcaccagtgcctttattttagtgaaaattaatcacttcaaatggttactacatgtttaacccactttggtaattaa-----aataggaaa |
34676399 |
T |
|
| Q |
400 |
gttaatattcatatca |
415 |
Q |
| |
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|||||||||||||||| |
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|
| T |
34676398 |
gttaatattcatatca |
34676383 |
T |
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