View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_29 (Length: 419)
Name: NF3173_low_29
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 67 - 407
Target Start/End: Original strand, 40353437 - 40353778
Alignment:
| Q |
67 |
agaaattcagtaccatcgattgctccgctccaaacaattttgtactaagtttatgatcaaacttacattgttcaaccgtatacaatttgtnnnnnnnnng |
166 |
Q |
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| T |
40353437 |
agaaattcagtaccatcgattgctccgctccaaacaattttgtactaagtttatgatcaaacttacattgttcaaccgtatacaatttgtaaaaaaaaaa |
40353536 |
T |
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| Q |
167 |
-ttatcacaccttggtctatcattatcttactcaacattatcggataatagatcatatttatgttactcaaattacccataactgtgtccaaaaacagca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40353537 |
attatcacaccttggtctatcattatcttactcaacattattggataatagatcatatttatgttactcaaattacacataactgtgtccaaaaacagca |
40353636 |
T |
|
| Q |
266 |
gtgacaaatttacctttttgatctttagagtgttgtaaatacaaaagttgtgtaggtttgagactcggtattcatcttggtcacattgtatgaatatctt |
365 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40353637 |
gtgacaaatttacctttttgttctttagagtgttgtaaatacaaaagttgtgtaggtttgagactcggcattcatcttggtcacattgtatgaatatctt |
40353736 |
T |
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| Q |
366 |
ctagataaagtaataaagaagaccatgatttgctttcatctg |
407 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40353737 |
cttgataaagtaataaagaagaccatgatttgctttcatctg |
40353778 |
T |
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