View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_30 (Length: 417)

Name: NF3173_low_30
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_30
NF3173_low_30
[»] chr7 (18 HSPs)
chr7 (16-316)||(19637641-19637939)
chr7 (345-412)||(19637577-19637644)
chr7 (319-409)||(18953268-18953358)
chr7 (319-409)||(18983315-18983405)
chr7 (319-409)||(18997961-18998051)
chr7 (356-408)||(24391074-24391126)
chr7 (201-249)||(18953465-18953513)
chr7 (126-249)||(18988314-18988437)
chr7 (319-400)||(18988126-18988207)
chr7 (278-367)||(19598074-19598161)
chr7 (358-411)||(22021051-22021104)
chr7 (201-249)||(18983512-18983560)
chr7 (360-409)||(22036771-22036820)
chr7 (127-160)||(22088050-22088083)
chr7 (352-409)||(29880927-29880984)
chr7 (201-249)||(18998158-18998206)
chr7 (353-405)||(19351400-19351452)
chr7 (125-157)||(22080311-22080343)
[»] chr4 (4 HSPs)
chr4 (345-411)||(3561316-3561382)
chr4 (352-405)||(3565397-3565450)
chr4 (357-405)||(1686649-1686697)
chr4 (353-405)||(3557380-3557432)
[»] chr3 (2 HSPs)
chr3 (350-405)||(3625412-3625467)
chr3 (361-405)||(36339792-36339836)
[»] chr1 (1 HSPs)
chr1 (356-405)||(39379425-39379474)
[»] chr5 (1 HSPs)
chr5 (354-408)||(42297805-42297859)
[»] chr2 (3 HSPs)
chr2 (352-402)||(20980251-20980301)
chr2 (355-411)||(18921085-18921141)
chr2 (353-409)||(20712872-20712928)
[»] scaffold0097 (1 HSPs)
scaffold0097 (353-409)||(16711-16767)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 19637939 - 19637641
Alignment:
Q  16 atttcagcatcgcaggtttctccctgtgtcgtttactgaagaacaaatccatcaacctagccaacaaacctaatttccgattgaaggacgtcgatggata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  19637939 atttcagcatcgcaggtttctccctgtgtcgtttactgaagaacaaatccatcaacctagccaacaaacctaatttccgattgaaggacgtctatggatt 19637840  T
Q  116 cctctatcctgttggttcctgcaatggattgctatgcttattcggttatttttcaatcaataactacgaagagaccttgctttacttatggaacccagca 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19637839 cctctatcctgttggttcctgcaacggattgctatgcttattcggttatttttcaatcaataactacgaagagaccttgctttacttatggaacccagca 19637740  T
Q  216 accaggacattgtctgacaaaatattgtttcttcggcagtatgaggtgaattttaaacgttattggaagtttgcgtttggttatatgataattcagttga 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  19637739 accaggacattgtctgacaaaatattgtttcttcggcagtatgaggtgaattttaaacgttattggaagtttgcgtttggt--tatgataattcagttga 19637642  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 19637644 - 19637577
Alignment:
Q  345 tgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19637644 tgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctatg 19637577  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 18953358 - 18953268
Alignment:
Q  319 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    ||||||||||||||||||| ||| || ||  ||||||||||||||||| | |||||| ||||| ||||||||| |||||||||||||||||    
T  18953358 ttataagattgtggcgttctatgaaaagatcaacgaggtgagagttttcaattttggcgataatgtttggagacatattcaaagttttcct 18953268  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 18983405 - 18983315
Alignment:
Q  319 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    ||||||||||||||||| | ||| || ||  ||||||||||||||||| | ||| || ||||| ||||||||| |||||||||||||||||    
T  18983405 ttataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcct 18983315  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 18998051 - 18997961
Alignment:
Q  319 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    ||||||||||||||||| | ||| || ||  ||||||||||||||||| | ||| || ||||| ||||||||| |||||||||||||||||    
T  18998051 ttataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaaagttttcct 18997961  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 24391074 - 24391126
Alignment:
Q  356 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 408  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  24391074 gtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 18953513 - 18953465
Alignment:
Q  201 ttatggaacccagcaaccaggacattgtctgacaaaatattgtttcttc 249  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  18953513 ttatggaacccagcaaccaagacattatctaacaaaatattgtttcttc 18953465  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 18988437 - 18988314
Alignment:
Q  126 gttggttcctgcaatggattgctatgcttattcggttatttttcaatcaataactacgaagagaccttgctttacttatggaacccagcaaccaggacat 225  Q
    |||||||||||||||||| |||| ||||| | ||||||  || | | |  ||| || |||||||  || || || ||||||||||||||||||| |||||    
T  18988437 gttggttcctgcaatggactgctctgcttgtacggttacgttaccaactctaattatgaagagatttttctatatttatggaacccagcaaccaagacat 18988338  T
Q  226 tgtctgacaaaatattgtttcttc 249  Q
    | ||| |||||||| |||||||||    
T  18988337 tatctaacaaaatagtgtttcttc 18988314  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 18988207 - 18988126
Alignment:
Q  319 ttataagattgtggcgttccatggaatgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaa 400  Q
    ||||||||||||||||| | ||| || ||  ||||||||||||||||| | ||| || ||||| ||||||||| ||||||||    
T  18988207 ttataagattgtggcgtactatgaaaagatcaacgaggtgagagttttcaatttaggcgataatgtttggagacatattcaa 18988126  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 367
Target Start/End: Complemental strand, 19598161 - 19598074
Alignment:
Q  278 ttggaagtttgcgtttggttatatgataattcagttgacacttataagattgtggcgttccatggaatgactaacgaggtgagagttttt 367  Q
    ||||||||| || ||||||||| || ||||||| |||||||||| ||||||||||| ||||||  || || |||||| ||||||||||||    
T  19598161 ttggaagttcgcatttggttat-tg-taattcaattgacacttacaagattgtggcattccatctaaagaataacgaagtgagagttttt 19598074  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 22021051 - 22021104
Alignment:
Q  358 gagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctat 411  Q
    |||||| |||||||| || ||||| ||||||||||||||| |||||||||||||    
T  22021051 gagagtatttagtttgggcgataatgtttggagaaatattgaaagttttcctat 22021104  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 18983560 - 18983512
Alignment:
Q  201 ttatggaacccagcaaccaggacattgtctgacaaaatattgtttcttc 249  Q
    ||||||||||||||||||| |||||| ||| |||||||| |||||||||    
T  18983560 ttatggaacccagcaaccaagacattatctaacaaaatagtgtttcttc 18983512  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 22036771 - 22036820
Alignment:
Q  360 gagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    |||| |||||||| || ||||| ||||||||||||||| |||||||||||    
T  22036771 gagtatttagtttgggcgataatgtttggagaaatattgaaagttttcct 22036820  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 22088050 - 22088083
Alignment:
Q  127 ttggttcctgcaatggattgctatgcttattcgg 160  Q
    |||||||||||||||||||||| |||||||||||    
T  22088050 ttggttcctgcaatggattgctttgcttattcgg 22088083  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 29880927 - 29880984
Alignment:
Q  352 cgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    ||||||||||||| | | | |||||||| | ||||||||||||||| |||||||||||    
T  29880927 cgaggtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct 29880984  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 18998206 - 18998158
Alignment:
Q  201 ttatggaacccagcaaccaggacattgtctgacaaaatattgtttcttc 249  Q
    ||||||||||||||||||| |||| | ||| |||||||| |||||||||    
T  18998206 ttatggaacccagcaaccaagacactatctaacaaaatagtgtttcttc 18998158  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 19351452 - 19351400
Alignment:
Q  353 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    ||||||| ||||||||||||  ||||||| ||||||||| |||||| ||||||    
T  19351452 gaggtgaaagtttttagtttgagtgataatgtttggagagatattccaagttt 19351400  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 22080311 - 22080343
Alignment:
Q  125 tgttggttcctgcaatggattgctatgcttatt 157  Q
    |||||||||||||||||||||||| ||||||||    
T  22080311 tgttggttcctgcaatggattgctttgcttatt 22080343  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 411
Target Start/End: Complemental strand, 3561382 - 3561316
Alignment:
Q  345 tgactaacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctat 411  Q
    |||||| ||||||||||| |||  ||||||||||||| ||||||||||||||| |||||||||||||    
T  3561382 tgactagcgaggtgagagctttcggttttggtgataatgtttggagaaatattgaaagttttcctat 3561316  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 3565397 - 3565450
Alignment:
Q  352 cgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  3565397 cgaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3565450  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 1686697 - 1686649
Alignment:
Q  357 tgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    |||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  1686697 tgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 1686649  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 3557380 - 3557432
Alignment:
Q  353 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  3557380 gaggttagagttttcagtttaggtgataatgtttggagaaatattgaaagttt 3557432  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 3625412 - 3625467
Alignment:
Q  350 aacgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    |||||||||| |||| | |||||||||||||| ||||||||||||||| |||||||    
T  3625412 aacgaggtgaaagttctcagttttggtgataatgtttggagaaatattgaaagttt 3625467  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 36339792 - 36339836
Alignment:
Q  361 agtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    |||||||||||||||||||||   ||||||| |||||||||||||    
T  36339792 agtttttagttttggtgataattgttggagatatattcaaagttt 36339836  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 39379474 - 39379425
Alignment:
Q  356 gtgagagtttttagttttggtgataaagtttggagaaatattcaaagttt 405  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  39379474 gtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 42297805 - 42297859
Alignment:
Q  354 aggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcc 408  Q
    |||||||||| |||||||| |  ||||| |||||||||| |||||||||||||||    
T  42297805 aggtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 20980251 - 20980301
Alignment:
Q  352 cgaggtgagagtttttagttttggtgataaagtttggagaaatattcaaag 402  Q
    ||||||||||||||| | | ||||||||||| ||||||||| |||||||||    
T  20980251 cgaggtgagagttttcactcttggtgataaattttggagaattattcaaag 20980301  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 18921141 - 18921085
Alignment:
Q  355 ggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcctat 411  Q
    ||||| |||||| |||||  ||||||| ||||||||  |||||||||||||||||||    
T  18921141 ggtgaaagttttcagtttgagtgataatgtttggagggatattcaaagttttcctat 18921085  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 20712928 - 20712872
Alignment:
Q  353 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    ||||| |||||||| | ||| || ||||| |||||||||||||||||| ||||||||    
T  20712928 gaggtcagagttttcactttgggcgataatgtttggagaaatattcaatgttttcct 20712872  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 16767 - 16711
Alignment:
Q  353 gaggtgagagtttttagttttggtgataaagtttggagaaatattcaaagttttcct 409  Q
    ||||| |||||||| | ||| || ||||| |||||||||||||||||| ||||||||    
T  16767 gaggtcagagttttcactttgggcgataatgtttggagaaatattcaatgttttcct 16711  T

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