View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_low_32 (Length: 413)
Name: NF3173_low_32
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Original strand, 8259818 - 8260206
Alignment:
| Q |
9 |
gagaagaacaagatgagtttattggaatattgcaagagttttccaaattgtttggagcttttaatatttctgattttgtaccttgctttggagctattga |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8259818 |
gagaaggacaagatgagtttattggaatattgcaagagttttccaaattgtttggagcttttaatatttctgattttgtaccttgctttggagctattga |
8259917 |
T |
|
| Q |
109 |
tcctcaagggcttaatgctaggcttgtgaaggctcgtaaagatttggatagtttcatagacaaaatcatagaggaacatgtgcagaagaagaagagtgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8259918 |
tcctcaagggcttaatgctaggcttgtgaaggctcgtaaagaattggatagtttcatagacaaaatcatagatgaacatgtgcagaagaagaagagtgtt |
8260017 |
T |
|
| Q |
209 |
gttgatgaagaaacggatatggtggatgagttgcttgctttctatagcgaggaagctaaattgaataatgaatcagatgatttgaataattctatcaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8260018 |
gttgatgaagaaacggatatggtggatgagttgcttgctttctatagcgaggaagctaaattgaataatgaatcagatgatttgaataattctatcaaac |
8260117 |
T |
|
| Q |
309 |
ttaccaaggataatatcaaagccatcatcatggtatgcgttcattttcaataattagattagatataatctcattttcttgaagttaat |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8260118 |
ttaccaaggataatatcaaagccatcatcatggtatgcgttcattttcaataattagattagatataatctcattttcttgaagttaat |
8260206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 32315933 - 32315798
Alignment:
| Q |
10 |
agaagaacaagatgagtttattggaatattgcaagagttttccaaattgtttggagcttttaatatttctgattttgtaccttgctttggag-ctattga |
108 |
Q |
| |
|
||||| |||||||||||| ||| ||| | ||||||||||| ||||||||||| |||||||||||| | |||||||| ||||| |||| || |||| |
|
|
| T |
32315933 |
agaaggacaagatgagttcatttcgatacttcaagagttttcgaaattgtttggtgcttttaatattgcggattttgttccttg-tttgaagtgggttga |
32315835 |
T |
|
| Q |
109 |
tcctcaagggcttaatgctaggcttgtgaaggctcgt |
145 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
32315834 |
tcctcaaggttttaatgataggcttgttaaggctcgt |
32315798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 32315729 - 32315595
Alignment:
| Q |
211 |
tgatgaagaaacggatatggtggatgagttgcttgctttctatagcgaggaagctaaattgaataatgaatcagatgatttgaataattctatcaaactt |
310 |
Q |
| |
|
||||||||| | |||||||| ||||| ||| | ||||| || || || ||||||||| | | |||||||| |||||| | |||| || |||||||| |
|
|
| T |
32315729 |
tgatgaagatagtgatatggttgatgaattgttggctttttacagtgatgaagctaaagtagaaaatgaatcggatgatcttcataactccatcaaactc |
32315630 |
T |
|
| Q |
311 |
accaaggataatatcaaagccatcatcatggtatg |
345 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
32315629 |
accagagataacatcaaagccattatcatggtatg |
32315595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University