View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_36 (Length: 410)
Name: NF3173_low_36
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 10794851 - 10795225
Alignment:
| Q |
18 |
atttacagccttctgtgcattgatcaaggcatttgttatacctataccaacctgaataaaaaatattgcaagcactcatgttagaaattcatcgattctg |
117 |
Q |
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| T |
10794851 |
atttacagccttctgtgcattgatcaaggcatttgttatacctataccaacctgaataaaaaatattgcaagcactcatgttagaaattcatggattctg |
10794950 |
T |
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| Q |
118 |
tgatttgttttgattattagacaaatattcaagtttcatgctgaaattatagacaaagtgcacaaggagataaaccctatgtccactttcttgattgttt |
217 |
Q |
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| T |
10794951 |
tgatttgttttgattattagacaaatattcaagtttcatgctgaaattatagacaaagtgcacaaggagataaaccctatgtccactttcttgattgttt |
10795050 |
T |
|
| Q |
218 |
gcagaacgttgaagttcaccatatgcaaggaccaagagtaagtttggcgaaatcatagaattttaaagaatgtatgaaaatgttagaacaagctgaaagg |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10795051 |
gcagaacgttgaagttcaccatatgcaaggatcaagagcaagtttggcgaaatcatagaattttaaagaatgtatgaaaatgttagaacaagctgaaagg |
10795150 |
T |
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| Q |
318 |
atagctttgtaaagaaggtaaattgcgtgtttaccagtgaagcaccggttccaactacgaacagctttgccccgt |
392 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10795151 |
atagctttgttaagaaggtaaattgcgtttttaccagtgaagcaccggttccaactacgaacagctttgccccgt |
10795225 |
T |
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