View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_37 (Length: 401)

Name: NF3173_low_37
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_37
NF3173_low_37
[»] chr3 (3 HSPs)
chr3 (16-293)||(36144894-36145171)
chr3 (199-277)||(7960925-7961003)
chr3 (41-93)||(36073397-36073449)
[»] chr7 (1 HSPs)
chr7 (220-272)||(8734321-8734373)
[»] chr4 (1 HSPs)
chr4 (214-266)||(18991320-18991372)
[»] chr1 (2 HSPs)
chr1 (23-270)||(11020001-11020243)
chr1 (225-278)||(48583308-48583361)
[»] chr2 (2 HSPs)
chr2 (34-157)||(19996544-19996665)
chr2 (199-277)||(20025187-20025265)
[»] chr8 (1 HSPs)
chr8 (220-278)||(5061459-5061517)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 36144894 - 36145171
Alignment:
Q  16 acatactaccttagccttagacaacaaataatgaaaaacatgtaaaacactcgcattaccttcaatcattttaatggccgagagagaatccccttgtaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36144894 acatactaccttagccttagacaacaaataatgaaaaacatgtgaaacactcgcattaccttcaatcattttaatggccgagagagaatccccttgtaca 36144993  T
Q  116 acaacttataatgaaatccatagtgttaacatatcaaaagactagtaaatgtctaacaaaaacctcttaactaagcgaaatataaatataaaataagctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36144994 acaacttataatgaaatccatagtgttaacatatcaaaagactagtaaatgtctaacaaaaacctcttaactaagcgaaatataaatataaaacaagctt 36145093  T
Q  216 gaacattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttcatatgtatattataa 293  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36145094 gaagattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttcatatgtatattataa 36145171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 7961003 - 7960925
Alignment:
Q  199 aaatataaaataagcttgaacattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaactt 277  Q
    ||||||||||||||  |||  ||||||||||||||||||||| ||| || |||| |||||||||||||||||| |||||    
T  7961003 aaatataaaataagtatgacgattaatttattagaagaaaatgttagttatttttatatttgtttgacaatattaactt 7960925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 36073397 - 36073449
Alignment:
Q  41 aaataatgaaaaacatgtaaaacactcgcattaccttcaatcattttaatggc 93  Q
    ||||||||||| ||| ||||| ||||| | ||| |||||||||||||||||||    
T  36073397 aaataatgaaatacacgtaaaccactcacgttatcttcaatcattttaatggc 36073449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 8734373 - 8734321
Alignment:
Q  220 attaatttattagaagaaaatattaattcttttaatatttgtttgacaatata 272  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  8734373 attaatttattagaagaaaatattaattcttcttatatttgtttgacaatata 8734321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 18991320 - 18991372
Alignment:
Q  214 ttgaacattaatttattagaagaaaatattaattcttttaatatttgtttgac 266  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  18991320 ttgaagattaatttattagaagaaaatgttaattctttttatatttgtttgac 18991372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 11020243 - 11020001
Alignment:
Q  23 accttagccttagacaacaaataatgaaaaacatgtaaaacactcgcattaccttcaatcattttaatggccgagagagaatccccttgtacaacaactt 122  Q
    |||||| ||| ||| ||||||| |||||||| | ||||||||||| ||  | ||||||| |||||||||||  ||||| |||||  ||||||||  ||||    
T  11020243 accttaacctgagataacaaatgatgaaaaataagtaaaacactctcaccatcttcaatgattttaatggcaaagagataatccatttgtacaatgactt 11020144  T
Q  123 ataatgaaatccatagtgttaacatatcaaaagac--tagtaaatgtctaacaaaaacctcttaactaagcgaaatataaatataaaataagcttgaaca 220  Q
     |||| |||| |||  ||||  | |||||||||||  | |||||||||||||||||  || | ||||||||       |||||||||| || | |||| |    
T  11020143 -taataaaattcatgttgtttgcctatcaaaagaccttggtaaatgtctaacaaaagtctttcaactaagc------aaaatataaaacaaacatgaaga 11020051  T
Q  221 ttaatttattagaagaaaatattaattcttttaatatttgtttgacaata 270  Q
    ||||||||| |||| ||||| ||| ||||||| |||||| ||||| ||||    
T  11020050 ttaatttataagaaaaaaatgttagttctttttatatttatttgataata 11020001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 48583308 - 48583361
Alignment:
Q  225 tttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttc 278  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||| | ||||||    
T  48583308 tttattagaagaaaatgttatttctttttatatttgtttgacaattttaacttc 48583361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 19996544 - 19996665
Alignment:
Q  34 agacaacaaataatgaaaaacatgtaaaacactcgcattaccttcaatcattttaatggccgagagagaatccccttgtacaacaacttataatgaaatc 133  Q
    ||||||||||| | |||||||||||||||||||| ||  | |||||||||||||| ||   |||||| |||| | |||||||  ||||  ||||||||||    
T  19996544 agacaacaaatgacgaaaaacatgtaaaacactcacaccatcttcaatcattttattgattgagagataatctctttgtacagtaact--taatgaaatc 19996641  T
Q  134 catagtgttaacatatcaaaagac 157  Q
    |||  ||||  |||||||||||||    
T  19996642 catgttgtttgcatatcaaaagac 19996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 20025187 - 20025265
Alignment:
Q  199 aaatataaaataagcttgaacattaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaactt 277  Q
    |||||||||| || | |||| |||||||||| |||||||||| ||| || | || |||||||||||||||||| |||||    
T  20025187 aaatataaaacaaacatgaagattaatttatcagaagaaaatgttagttgtatttatatttgtttgacaatattaactt 20025265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 5061459 - 5061517
Alignment:
Q  220 attaatttattagaagaaaatattaattcttttaatatttgtttgacaatataaacttc 278  Q
    |||| |||||||||||||||||||| || |||| ||||||||||| |||||| ||||||    
T  5061459 attattttattagaagaaaatattagttttttttatatttgtttggcaatatcaacttc 5061517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University