View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_low_42 (Length: 390)
Name: NF3173_low_42
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_42 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 36145350 - 36145729
Alignment:
| Q |
1 |
cgtatttttctatatccaaagtaactcataatgcattcgagagatgtagttcaatggttagagcttaactttataaaaatggattgaaaataatagatta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36145350 |
cgtatttttctatatccaaagtaagtcataatttgttcgagagatgtagttcaatggttagagcttaactttataaaaatggattgaaaataatagatta |
36145449 |
T |
|
| Q |
101 |
tttcaatcacaaattcaaaagattaatagcatgtttgattctgatttcttgttacaaatatattagcgttgcaaagacgacgattcctccgcaattttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36145450 |
tttcaatcacaaattcaaaagattaata---------attctgatttcttgttacaaatatattagcgttgcaaagacgacgattcctccgcaattttaa |
36145540 |
T |
|
| Q |
201 |
gaagttgtatacccaaatttccccctaaacacatgtctagattcactccaaagtgggaacaaaaacttcctaagaaaatgttagaaagtcttgaattcaa |
300 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36145541 |
gaagttttatacccaaattttcccctaaacacatgtctagattcactccaacctgggaacaaaaactccccaagaaaatgttagaaagtcttgaattcaa |
36145640 |
T |
|
| Q |
301 |
agccgattgcataaagagaaaaggaaatcaaagctgaatataattcttatacgagctatacttttatttatttattttaggattatatta |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36145641 |
agccgattgcataaagagaaaaggaaatcaaagctgaatataattctaatacgagctatac-tttatttatttattttaggattatatta |
36145729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 26531332 - 26531298
Alignment:
| Q |
107 |
tcacaaattcaaaagattaatagcatgtttgattc |
141 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
26531332 |
tcacaaattcaaaagattaatagcctgtttgattc |
26531298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University