View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_46 (Length: 378)
Name: NF3173_low_46
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 32219753 - 32220118
Alignment:
| Q |
1 |
atttaataagaataatattttaaaagtacctctcaacaaaaaaggagtggtagttaaaggatctcacagtttgccgacatgagaggtaaatagtatttca |
100 |
Q |
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| T |
32219753 |
atttaataagaataatattttaaaagtacctctcaaaaaaaaaggagtggtagttaaaggatctcacagtttgccgacataagaggtaaatagtatttca |
32219852 |
T |
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| Q |
101 |
aaggacacgtattcttactataatatttatgtatgagtcgataggatagacccacgttaaaatcttcaaccacacaattttcatagatattttcttttgc |
200 |
Q |
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| T |
32219853 |
aaggacacgtattcttactataatatttatgtatgagtcgataggatagacccacgttaaaatcttcaaccacacaattttcatagatattttcttttgc |
32219952 |
T |
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| Q |
201 |
aaaaaaccacccc-aagttatataaataattgaacaaccttgttgaagtattacacttgcagaaccaattattcattacttaaaacaa-cnnnnnnnnnn |
298 |
Q |
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| T |
32219953 |
aaaaaaccacccctaagttatataaataattgaacaaccttgttgaagtattacacttgcagaaccaattattcattacttaaaacaagaaaaataaaaa |
32220052 |
T |
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| Q |
299 |
nnncg-atggcaggaacaggagaaccaaataagtttctaccaagcgaggttttggggagtgcaaag |
363 |
Q |
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| T |
32220053 |
aaacgaatggcaggaacaggagaaccaaataagtttctaccaagcgaggttttggggagtgcaaag |
32220118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 32218430 - 32218477
Alignment:
| Q |
316 |
ggagaaccaaataagtttctaccaagcgaggttttggggagtgcaaag |
363 |
Q |
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| T |
32218430 |
ggagaaccaaataagtttctaccaagtgaggttttggggagtgcaaag |
32218477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 32209993 - 32210061
Alignment:
| Q |
124 |
tatttatgtatgagtcgataggatagacccacgttaaaatcttcaaccacacaattttcatagatattttc |
194 |
Q |
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| T |
32209993 |
tatttatgtttgaatagataaggtagacccacattaaaatcttcaac--cacaatattcatagatattttc |
32210061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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