View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_47 (Length: 375)
Name: NF3173_low_47
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 365
Target Start/End: Complemental strand, 40453769 - 40453425
Alignment:
| Q |
21 |
acaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatac |
120 |
Q |
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| T |
40453769 |
acaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatac |
40453670 |
T |
|
| Q |
121 |
tatcaaccggttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgc |
220 |
Q |
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| T |
40453669 |
tatcaaccggttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgc |
40453570 |
T |
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| Q |
221 |
atttttctttttcttatcgctaagctttgaagtagtgtttttcttggccttttcatggacatgtttagggttgatgggtaaaggagaaggtgaactagga |
320 |
Q |
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| T |
40453569 |
atttttctttttcttatcgctaagctttgaagtagtgtttttcttggccttttcatggacatgtttagggttgatgggtaaaggagaaggtgaactagga |
40453470 |
T |
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| Q |
321 |
gcagtgacagtgagatctcttgctggagttctttttggatctgtg |
365 |
Q |
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| T |
40453469 |
gcagtgacagtgagatctcttgctggagttctttttggatctgtg |
40453425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 31286459 - 31286398
Alignment:
| Q |
23 |
accatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaat |
84 |
Q |
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| T |
31286459 |
accatccaaagaaattgcgtcaccaagcaaatattttgatgatgcaagagaagtgattaaat |
31286398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 31252487 - 31252370
Alignment:
| Q |
22 |
caccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctg-gcttaacccaactccttcttaaaatac |
120 |
Q |
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|||||||| ||||| | |||||||||||||||||||| | || |||| |||||||| || ||||||| || || |||||||||| ||||| |||| |
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| T |
31252487 |
caccatccgaagaatttatgtcaccaagcaaatatcttaacgacttaggtggagtgatgaagtcagaaggtgacctaaacccaactc---cttaagatac |
31252391 |
T |
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| Q |
121 |
tatcaaccggttttgaagagt |
141 |
Q |
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|||||| ||||||||||||| |
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| T |
31252390 |
tatcaattggttttgaagagt |
31252370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 31252282 - 31252246
Alignment:
| Q |
329 |
agtgagatctcttgctggagttctttttggatctgtg |
365 |
Q |
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| T |
31252282 |
agtgagatctcttgagggagttctttttggatctgtg |
31252246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 273
Target Start/End: Original strand, 20008124 - 20008263
Alignment:
| Q |
131 |
ttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttcttt |
230 |
Q |
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|||||||||||||||||||||||| |||| ||| | |||||||| ||||||| |||||||| || || || | ||| ||| ||||| ||||| ||| |
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| T |
20008124 |
ttttgaagagtaattgtttgcaatttgtttagtaagtttttctgatgtagta---cttttctttttatggacacgggtagccttggttgcttttttattt |
20008220 |
T |
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| Q |
231 |
ttcttatcgctaagctttgaagtagtgtttttcttggcctttt |
273 |
Q |
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||||||| | ||| |||| ||||| ||||||||||||||| |
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| T |
20008221 |
ttcttattatttagcaatgaaatagtgattttcttggcctttt |
20008263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 24973587 - 24973555
Alignment:
| Q |
131 |
ttttgaagagtaattgtttgcaatatgttcagt |
163 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
24973587 |
ttttgaagagtaattgtttgcaatttgttcagt |
24973555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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