View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_48 (Length: 366)
Name: NF3173_low_48
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 260554 - 260883
Alignment:
| Q |
11 |
cacagataaatttggttgtttttattgcatgattgaataataattcttgtgaagggtaaacatgtta-ggatcacatcaatttagcataaatttgagagg |
109 |
Q |
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| T |
260554 |
cacagataaatttggttgtttttattgcatgattgaataataattcttgtgaagggtaaacatgttaaggatcacatcaatttagcataaatttgagagg |
260653 |
T |
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| Q |
110 |
ttagaactccaagaacatatttttatcctataggcagcctaannnnnnnnnnnnnnnnnnnngattgggagaaaagcgaaaaaaggtgatacctgttgca |
209 |
Q |
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| T |
260654 |
ttagaactccaagaacatatttctatcctacaggcagcctaaaataataataa---------gattgggagaaaagcgaaaaaaggtgatacctgttgca |
260744 |
T |
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| Q |
210 |
gggagtgtcaggggttggaatgtgggtaagatcatttgataaggagtggagatgatgacacgaagttcgagcatcgacccaaccagattgagagccatgg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260745 |
gggagtgtcaggggttggaatgtgggtaagatcatttgataaggagtggagatgatgacacgaagttcgagcatcgacccaaccagattgagagccatgg |
260844 |
T |
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| Q |
310 |
attaagtcgtaatcttcttccgataaaccaccttcctga |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
260845 |
attaagtcgtaatcttcttccgataaaccaccttcctga |
260883 |
T |
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