View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_50 (Length: 355)
Name: NF3173_low_50
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 35791548 - 35791220
Alignment:
| Q |
1 |
cttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctacatggagaaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791548 |
cttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctacatggagaaacac |
35791449 |
T |
|
| Q |
101 |
ctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagctaat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791448 |
ctccttctacaaaataataataattcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagctaat |
35791349 |
T |
|
| Q |
201 |
agtctaatcatgtctaatatgacaagtatttcaagataacgaataaagagt-ttttgctcacggcctaccaaagcgttatgttattttactcttgagatc |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35791348 |
agtctaatcatgtctaatatgacaagtattccaagataacgaataaagagttttttgctcacggcctaccaaagcgttatgttattttactcttgagatc |
35791249 |
T |
|
| Q |
300 |
ctatgcattgtcaatgcaatatactacta |
328 |
Q |
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| T |
35791248 |
ctatgcattgtcaatgcaatatactacta |
35791220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 248
Target Start/End: Complemental strand, 35782191 - 35782045
Alignment:
| Q |
98 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
197 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
35782191 |
cacctccttctacaaaataataat---tcgaataactaatcatattgagtacatgttatgtgaccccatatgaaaattttgctattacatagcaataact |
35782095 |
T |
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| Q |
198 |
aatagtctaatcatgtctaatatgacaagtatttcaagataacgaataaag |
248 |
Q |
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| T |
35782094 |
aatagtctgatcatgtc-aatatggcaagtattacaagataacgaataaag |
35782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35782265 - 35782183
Alignment:
| Q |
1 |
cttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctt |
83 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35782265 |
cttacgtttgcaacatttagaggagcaggtcatgcagttccatgtttcaaaccaagcaactcacttgtgtttttcacctcctt |
35782183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 35785071 - 35784976
Alignment:
| Q |
98 |
cacctccttctacaaaataataataactcgaataactaatcatattgggtacatgttatgtgaccccgtatgaaaattttgctattacatagcaatagct |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||||| ||||||||| ||||| | ||||||||||| ||||||||||| |||||||| |
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| T |
35785071 |
cacctccttctacaaaataat------tcgaataattaattatattggatacatgttacgtgactcgatatgaaaatttagctattacataccaatagct |
35784978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 35781013 - 35780968
Alignment:
| Q |
280 |
gttattttactcttgagatcctatgcattgtcaatgcaatatacta |
325 |
Q |
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|||||||||||||| | ||||||| |||||| |||||||||||||| |
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| T |
35781013 |
gttattttactcttcatatcctatccattgtgaatgcaatatacta |
35780968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3334984 - 3335090
Alignment:
| Q |
1 |
cttacatttgcaacatttagaggagcaggtcacgcagttccctgtttcaaaccaagcaactcacttgcgtttttcacctcctttctacatggagaaacac |
100 |
Q |
| |
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||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| || |||||| ||||||| | ||||||| ||| |
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| T |
3334984 |
cttacgtttgctacatttagaggagctggtcatgcagtgccctgttttaaaccaagcaattcacttaaattcttcaccacctttcttcttggagaatcac |
3335083 |
T |
|
| Q |
101 |
ctccttc |
107 |
Q |
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| ||||| |
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| T |
3335084 |
caccttc |
3335090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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