View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_51 (Length: 354)
Name: NF3173_low_51
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 1328311 - 1328640
Alignment:
| Q |
1 |
ataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328311 |
ataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgct |
1328410 |
T |
|
| Q |
101 |
gaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328411 |
gaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcg |
1328510 |
T |
|
| Q |
201 |
cattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328511 |
cattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttct |
1328610 |
T |
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| Q |
301 |
agcagaaggtgaccctgcttatgagcaaga |
330 |
Q |
| |
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| T |
1328611 |
agaagaaggtgaccctgcttatgagcaaga |
1328640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 1923654 - 1923928
Alignment:
| Q |
21 |
cattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgt |
120 |
Q |
| |
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||||||||| |||| |||| ||||| || ||||| ||||||||||| |||||| || |||||||| ||||| | | ||| ||| | ||||| ||||| |
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| T |
1923654 |
cattaagaagagccattggagcagtgaaagatcaaacaagcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgt |
1923753 |
T |
|
| Q |
121 |
gaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcgcattcattagtgcttgtgtt |
220 |
Q |
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||||| || | || |||||| |||| |||||||| | | | || | |||||||| || |||||||||||||| || |||||||| ||| ||||||| |
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| T |
1923754 |
taaagcaacaaaacatgatgaaaatccagctgaagaaagacacattagagagattctaagcttaacatgttactcacgagcattcataagttcttgtgtg |
1923853 |
T |
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| Q |
221 |
aataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaagg |
295 |
Q |
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|| || ||||| | ||| | | |||||| | | ||||||||| ||||| ||||| ||| |||||||||||||| |
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| T |
1923854 |
aacacactctctaaacgtttgatcaagacaagcagttggacagttgctttaaaaacacttgttttgattcaaagg |
1923928 |
T |
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