View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_52 (Length: 353)

Name: NF3173_low_52
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_52
NF3173_low_52
[»] chr4 (5 HSPs)
chr4 (1-340)||(16658605-16658943)
chr4 (202-278)||(18391551-18391627)
chr4 (133-231)||(1666500-1666597)
chr4 (202-263)||(45180010-45180071)
chr4 (205-269)||(19338602-19338666)
[»] chr3 (3 HSPs)
chr3 (1-340)||(33285325-33285663)
chr3 (1-109)||(4187697-4187805)
chr3 (1-109)||(34011800-34011908)
[»] scaffold0163 (1 HSPs)
scaffold0163 (1-340)||(32831-33169)
[»] chr5 (1 HSPs)
chr5 (1-340)||(25042518-25042852)
[»] chr7 (1 HSPs)
chr7 (1-163)||(8398219-8398381)
[»] chr8 (2 HSPs)
chr8 (1-109)||(38616190-38616298)
chr8 (296-326)||(44354207-44354237)
[»] chr1 (2 HSPs)
chr1 (129-263)||(16090733-16090866)
chr1 (203-273)||(25625724-25625794)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 16658943 - 16658605
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16658943 ctttattaattcatgcatccctacctccatcattttggtaatatgctttagaaatggccacatatatctctaacattttatcaagcaaaacaatcaattt 16658844  T
Q  101 tcagtcaccagtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgcttccctcttttttccctcaagtaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  16658843 tcagtcaccagtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgctttcctc-tttttccctcaagtaccat 16658745  T
Q  201 ccataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataagtgtcttgatatgaaaaccaacaaacttatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||||    
T  16658744 ccataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcaaggatataagtgtcttgatatgacaaccaacaaaattatc 16658645  T
Q  301 atttgtcgtcatgtcttgtttaatgagtctacttttccct 340  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  16658644 atttgtcgtcatgtcttgtttgatgagtctacttttccct 16658605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 18391551 - 18391627
Alignment:
Q  202 cataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataagtgtcttga 278  Q
    |||||||| ||||||||||| ||||||||| | ||||||||||| || ||||| ||| | || || |||||||||||    
T  18391551 cataaacttcaacctcgctctacaccatgtgtctttcttgggtacccgtcaaatcatagaggttacaagtgtcttga 18391627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 1666500 - 1666597
Alignment:
Q  133 acccatcatatactcatttacgcatttttggttgtttatgcttccctcttttttccctcaagtaccatccataaactccaacctcgctccacaccatgt 231  Q
    ||||||| || |||||||||||  |||||||||||||||| | ||||| ||||||| ||||  || ||  ||||||||||| |||| ||||| ||||||    
T  1666500 acccatcctacactcatttacgagtttttggttgtttatgttaccctc-tttttccatcaaccactataaataaactccaatctcgttccaccccatgt 1666597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 45180010 - 45180071
Alignment:
Q  202 cataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtgg 263  Q
    ||||| |||||||||||||||||||||||| ||||  | || ||||||||| | ||||||||    
T  45180010 cataagctccaacctcgctccacaccatgtgtattcttaggttatccatcacatcatcgtgg 45180071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 19338666 - 19338602
Alignment:
Q  205 aaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataa 269  Q
    ||||| |||||||| ||||||  |||| |||||||||||||||| ||||| ||||| || |||||    
T  19338666 aaacttcaacctcgttccacaaaatgtgtatttcttgggtatccgtcaaatcatcgaggctataa 19338602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 33285325 - 33285663
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33285325 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagaaaaacaatcaattt 33285424  T
Q  101 tcagtcaccagtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgcttccctcttttttccctcaagtaccat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  33285425 tcagtcacccgtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgctttcctc-tttttccctcaagtaccat 33285523  T
Q  201 ccataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataagtgtcttgatatgaaaaccaacaaacttatc 300  Q
    | |||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  33285524 ctataaactctaacctcgctctacaccatgtatatttcttgggtatccgtcaaaccatcgtggatataagtgtcttgatatgacaaccaacaaaattatc 33285623  T
Q  301 atttgtcgtcatgtcttgtttaatgagtctacttttccct 340  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  33285624 atttgtcgtcatgtcttgtttgatgagtctacttttccct 33285663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4187805 - 4187697
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    ||||||||||||| || ||  ||||  | |||||||||||  |||||||||||||||| |||||| ||   || |||||||||  |||||| ||||||||    
T  4187805 ctttattaattcacgcgtcattaccatcttcattttggcaccatgctttagaaatggcaacatatctcatgaatattttaccacacaaaactatcaattt 4187706  T
Q  101 tcagtcacc 109  Q
    | |||||||    
T  4187705 tgagtcacc 4187697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 34011800 - 34011908
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    ||||||||||||| || ||  ||||  | |||||||||||  |||||||||||||||| |||||| ||   || ||||||||||||||||| ||  ||||    
T  34011800 ctttattaattcacgcgtcattaccatcttcattttggcaccatgctttagaaatggcaacatatctcatgaatattttaccaagcaaaactattgattt 34011899  T
Q  101 tcagtcacc 109  Q
    | |||||||    
T  34011900 tgagtcacc 34011908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 33169 - 32831
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33169 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 33070  T
Q  101 tcagtcaccagtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgcttccctcttttttccctcaagtaccat 200  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  33069 ttagtcacccgtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgctttcctc-ttttcccctcaagtaccat 32971  T
Q  201 ccataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataagtgtcttgatatgaaaaccaacaaacttatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||| |||||||||| |||||    
T  32970 ccataaactccaacctcgctccacaccatgtatatttcttggatatccgtcaaaccatcgcggatataagtatcttgatatgacaaccaacaaaattatc 32871  T
Q  301 atttgtcgtcatgtcttgtttaatgagtctacttttccct 340  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  32870 atttatcgtcatgtcttgtttgatgagtctacttttccct 32831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 25042518 - 25042852
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    ||||| ||||| |||| |||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||    
T  25042518 ctttactaattaatgcctccctacctccatcattttgacattatgctttacaaatggtcacatatatctctaacattttaccaagcaaatcaattaattt 25042617  T
Q  101 tcagtcaccagtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttggttgtttatgcttccctcttttttccctcaagtaccat 200  Q
    |||||||||  | | |||||||||||||| |||| |||||||  | ||||||||||| |||||||    |||||| || | | |||||||||||||||||    
T  25042618 tcagtcacctatatacatgttatacaacacaaactcatcatactcacatttacgcatctttggtt----atgctttcc-catctttccctcaagtaccat 25042712  T
Q  201 ccataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataagtgtcttgatatgaaaaccaacaaacttatc 300  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||  || ||| ||| || ||||||||||||| |||||| || ||||||| |||||    
T  25042713 ccataaactccagcctcgctccacaccatgtgtatttcttgggtatctgtctaactatcatgaatataagtgtctttatatgacaaacaacaaaattatc 25042812  T
Q  301 atttgtcgtcatgtcttgtttaatgagtctacttttccct 340  Q
    |||||||||||||||||||||| |||| |||| |||||||    
T  25042813 atttgtcgtcatgtcttgtttagtgaggctacctttccct 25042852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8398219 - 8398381
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  8398219 ctttattaattcatgcattcctacctccatcattttggcaatatgctctagaaatggccacatatatctctaacattttaccaagcaaatcaatcaactt 8398318  T
Q  101 tcagtcaccagtttccatgttatacaacaaaaacccatcatatactcatttacgcatttttgg 163  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8398319 tcagtcacccgtttccatgttatacaacaaaaacccatcatatactgatttacgcatttttgg 8398381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 38616298 - 38616190
Alignment:
Q  1 ctttattaattcatgcatccctacctccatcattttggcaatatgctttagaaatggccacatatatctctaacattttaccaagcaaaacaatcaattt 100  Q
    ||||||||||||| || ||  ||||  | |||||||||||  |||||||||||||||| |||||| ||   || ||||||||||||||||| ||  ||||    
T  38616298 ctttattaattcacgcgtcattaccatcttcattttggcaccatgctttagaaatggcaacatatctcatgaatattttaccaagcaaaactattgattt 38616199  T
Q  101 tcagtcacc 109  Q
    | |||||||    
T  38616198 tgagtcacc 38616190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 44354237 - 44354207
Alignment:
Q  296 ttatcatttgtcgtcatgtcttgtttaatga 326  Q
    |||||||||||||||||||||||||||||||    
T  44354237 ttatcatttgtcgtcatgtcttgtttaatga 44354207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 16090733 - 16090866
Alignment:
Q  129 aaaaacccatcatatactcatttacgcatttttggttgtttatgcttccctcttttttccctcaagtaccatccataaactccaacctcgctccacacca 228  Q
    ||||||||||| || |||||||||||  |||| ||||||||||| || || | ||||||| ||||  || ||  ||||||||||| |||| ||||| |||    
T  16090733 aaaaacccatcctacactcatttacgagttttcggttgtttatg-ttaccccctttttccatcaaccactataaataaactccaatctcgttccacccca 16090831  T
Q  229 tgtatatttcttgggtatccatcaaaccatcgtgg 263  Q
    ||| | ||  | |||||||| ||||| ||||||||    
T  16090832 tgtgtcttcttagggtatccttcaaatcatcgtgg 16090866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 25625794 - 25625724
Alignment:
Q  203 ataaactccaacctcgctccacaccatgtatatttcttgggtatccatcaaaccatcgtggatataagtgt 273  Q
    |||||||||||||||| || ||||||||| | ||||| || |||||||| |||||| | || |||||||||    
T  25625794 ataaactccaacctcggtctacaccatgtgtctttctaggatatccatctaaccatagaggttataagtgt 25625724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University