View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_low_54 (Length: 348)
Name: NF3173_low_54
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 42393814 - 42394148
Alignment:
| Q |
1 |
aatcagagttaaacaaaccatataccgcnnnnnnnngaagtgagaagacgcaaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42393814 |
aatcagagttaaacaaaccatataccgcaaaaaa---aagtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcac |
42393910 |
T |
|
| Q |
101 |
gtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacnnnnnnnnnnnnnnntccttactttcactttcctttccttctacatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
42393911 |
gtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatcc |
42394010 |
T |
|
| Q |
201 |
ttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42394011 |
ttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagcca |
42394110 |
T |
|
| Q |
301 |
acgaaggnnnnnnntccgacaagttcggcttccctatg |
338 |
Q |
| |
|
|| ||| || ||||||||||||||||||||| |
|
|
| T |
42394111 |
gcgcaggaaaaaaatctgacaagttcggcttccctatg |
42394148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 42378104 - 42378197
Alignment:
| Q |
209 |
tcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaac |
302 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
42378104 |
tcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattcatatctttcacaacaccctgcaaatcaaaccgggccaac |
42378197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 42377959 - 42378044
Alignment:
| Q |
67 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaac |
152 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaac |
42378044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University