View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_56 (Length: 346)
Name: NF3173_low_56
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_56 |
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| [»] scaffold0028 (2 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 109055 - 109257
Alignment:
| Q |
20 |
agacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgct |
119 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109055 |
agacctttatacaagctcaaaacccagccaaacgactcaaacaatactcattagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgct |
109154 |
T |
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| Q |
120 |
ggaagatatcgtctataaatctgttaacattaaggaaaaactaatcttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgt |
219 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109155 |
ggaagatatcgtctctaaatctgttaacattaaggaaaaactaatcttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgt |
109254 |
T |
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| Q |
220 |
gaa |
222 |
Q |
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||| |
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| T |
109255 |
gaa |
109257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 109283 - 109399
Alignment:
| Q |
219 |
tgaagagtaagagcattgtactcgatgttgtaatgacaagtattggttggaaagaattttgtgagttagatcagttaatttatccaaacctagttcaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109283 |
tgaagagtaagagcattgtactcgatgttgtaatgacaagtattggttggaaagaattttgtgagttagatcagttaatttatccaaacctagttcaaca |
109382 |
T |
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| Q |
319 |
attct-ctcatccccta |
334 |
Q |
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| T |
109383 |
atcctactcatccccta |
109399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 21757145 - 21757298
Alignment:
| Q |
23 |
cctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctgga |
122 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21757145 |
cctttatacaagctcaaaaccctgccaaacgactcaaacaatcctcatcagctttttcaccgtacgatcgcaaggaagctaagaaggaaaaaatgctgga |
21757244 |
T |
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| Q |
123 |
agatatcgtctataaatctgttaacattaaggaaaaactaatcttgaatccata |
176 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21757245 |
agatatcgtctcaaaatctgttaacattaaggaaaaactaatcttgaatccata |
21757298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 101853 - 101662
Alignment:
| Q |
31 |
caagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcg |
130 |
Q |
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||||||||||| ||| ||||| |||||||| || ||||| ||||||||||||||| ||||||||||| ||| |||| ||||| ||| |||||||||| |
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| T |
101853 |
caagctcaaaatcctaccaaacgactcaaaacatcctcatcagctttttcaccatatgatcgcaaggaggctcagaaagaaaagatgatggaagatatta |
101754 |
T |
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| Q |
131 |
tctataaatctgttaacattaaggaaaaactaatcttgaatccatacctaacaaacccagcacctgaaattccttcaagacctctctgtgaa |
222 |
Q |
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||| ||| ||| |||||||| || || ||||||| |||||||| | ||||| ||||| |||||||| | |||||||||||||||||| |
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| T |
101753 |
tctcaaaacttgtcaacattaaagagaagataatcttaaatccatatcaaacaagtccagctcctgaaatctcgtcaagacctctctgtgaa |
101662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 13936004 - 13936121
Alignment:
| Q |
35 |
ctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcgcaaggaagctaagaaggaaaaaatgctggaagatatcgtcta |
134 |
Q |
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||||||| ||||||||| |||||||| || |||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| |
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| T |
13936004 |
ctcaaaatcctgccaaacgactcaaatcatcttcatcagctttttcaccatacgatcgcaaggaggctcagaaagaaaaaatgctggaagatatcatctc |
13936103 |
T |
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| Q |
135 |
taaatctgttaacattaa |
152 |
Q |
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||| |||| |||||||| |
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| T |
13936104 |
aaaacctgtcaacattaa |
13936121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 613124 - 613196
Alignment:
| Q |
20 |
agacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcg |
92 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| |||||||| |||||||| |
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| T |
613124 |
agacctttacacaagctcaaaaccctgccaaacgactcaaacaacactcatcagccttttcaccgtacgatcg |
613196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 14913784 - 14913856
Alignment:
| Q |
20 |
agacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcg |
92 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
14913784 |
agacctttacacaagctcaaaaccctgtcaaatgactcaaacaatactcatcagctttttcaccgtacaatcg |
14913856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 118541 - 118613
Alignment:
| Q |
20 |
agacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcg |
92 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| |||||||| |||||||| |
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| T |
118541 |
agacctttacacaagctcaaaaccctgccaaacgactcaaacaacactcatcagccttttcaccgtacgatcg |
118613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 722162 - 722090
Alignment:
| Q |
20 |
agacctttatacaagctcaaaaccctgccaaatgactcaaacaatactcataagctttttcaccatacgatcg |
92 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| |||||||| |||||||| |
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| T |
722162 |
agacctttacacaagctcaaaaccctgccaaacgactcaaacaacactcatcagccttttcaccgtacgatcg |
722090 |
T |
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