View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_59 (Length: 336)
Name: NF3173_low_59
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 29323764 - 29323529
Alignment:
| Q |
17 |
taaacgggtcagtttgtattgatataaattttaaaataattatcttatacgggacaagttatcgctgatacatattatgaaataataattatatacaact |
116 |
Q |
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| T |
29323764 |
taaacgagtcattttgtattgatataaattttaaaataattatcttacatgggacaagttatcgttgatacatattatgaaataataattatatacaact |
29323665 |
T |
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| Q |
117 |
tttaaaataagcgtcatacactagagaagttgttagtgataaaatgttttaatt-aaatattata-atggaaaaagttatcgctgatacatattttaaaa |
214 |
Q |
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| T |
29323664 |
tttaaaataagtgtcatacactagagaagttgttagtgatcaaaggttttaattaaaatattatacatgaaaaaagttatcact-atacatattttaaaa |
29323566 |
T |
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| Q |
215 |
taattattatgcataagataagttgtcattgataata |
251 |
Q |
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| T |
29323565 |
taattattatgcacaagataagttgtcattgataata |
29323529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 29323372 - 29323299
Alignment:
| Q |
246 |
ataatatatgaaactaaaataaatcaccaacaccgacggatacccgtacagattactagttacagggtaagagt |
319 |
Q |
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| T |
29323372 |
ataatatatgaaactaaaataaatcaccaacaccgacggatacccgtacagattactagttacagggtaagagt |
29323299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11810168 - 11810208
Alignment:
| Q |
188 |
aagttatcgctgatacatattttaaaataattattatgcat |
228 |
Q |
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| T |
11810168 |
aagttatcgttgatacatattttaaaataagtattatgcat |
11810208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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