View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_62 (Length: 325)
Name: NF3173_low_62
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9818332 - 9818087
Alignment:
| Q |
1 |
atgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgcacaacaatgtcgcacttggcataatgtatgnnnnnnnnnnnnn |
100 |
Q |
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| T |
9818332 |
atgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgcacaacaatgtcgcacttggcataatgtatgaaaaataaaaaat |
9818233 |
T |
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| Q |
101 |
nn-----tactgaagctaacaaatcaaaacttcaggttcattttagttttgaacacatcaaaatccaaacttaaggttcatttaagtttctgttgtccat |
195 |
Q |
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| T |
9818232 |
aaaaaaatactgaagctaacaaatcaaaacttcaggttcattttagttttgaacacatcaaaatccaaacttaaggtttatttaagtttctgttgtccat |
9818133 |
T |
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| Q |
196 |
tcgcttttcactcaacaacaaatcgctaccatagtcaagttcatcg |
241 |
Q |
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| T |
9818132 |
tcgcttttcactcaacaacaaatcgataccatagtcaagttcatcg |
9818087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 9772479 - 9772398
Alignment:
| Q |
237 |
catcgcagcgattcatctcgatggaccagcactcctaactctcattatgcgggatttatcagaaaacactcctttgtctctg |
318 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9772479 |
catcgcagcgattcagctcgatggaccagcactcctaactctcattatgcgggatttatcagaaaacactcctttgtctctg |
9772398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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