View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_7 (Length: 661)
Name: NF3173_low_7
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 37503148 - 37502769
Alignment:
| Q |
13 |
aatatcaactaccttcttgactcaaaatccacattttccatttgatgctcatggctccacttgattgttcacaatgatccacatggttctccttcgtcca |
112 |
Q |
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| T |
37503148 |
aatatcaactaccttcttgactcaaaatccacattttccatttgatggtcatggctccacttgattgctcacaatgatccacatggttctccttcgtcca |
37503049 |
T |
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| Q |
113 |
ccaaacaaatttggaaaaaacaattctgttttaacacgcacaaaaccactcgaatcatttctgatgcaggcaccaatgccttctccattactagcattgg |
212 |
Q |
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| T |
37503048 |
ccaaacaaatttggaaaaaacaattctgttttaacacgcacgaaaccactcgaatcatttctgatgcaggcaccaatgccttctccattactagcattgg |
37502949 |
T |
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| Q |
213 |
aaaatgaggcattgatattgcattacagcatatttggatcaggtttcaaccatctatctctataattggagcaacagctcgtttctgcttctgtctcata |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
37502948 |
aaaatgaggcattgatattgcattacagcatatttggatcaggtttcaaccatctatctctataattggagtaacagctcgtttctgcttctgcctcata |
37502849 |
T |
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| Q |
313 |
gtctgcgctgtgtagcacaccaaccattaagcaagtatcttgcttgcactgccacctacatcgcagtctcaagaatgcta |
392 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37502848 |
gtctgcgctgtgtggcacaccaaccattaagcaagtatcttgcttgcactgccacctacatcgcagtctcaagaatgcta |
37502769 |
T |
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