View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_70 (Length: 310)
Name: NF3173_low_70
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 38947964 - 38948247
Alignment:
| Q |
19 |
gatccacatagcttatattggggtcaattgaccccacttctctttgaaaaataaaccaataatttgatgt--------attgactccacatatccagaaa |
110 |
Q |
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| T |
38947964 |
gatccacatagctcatattggggtcaattgacctcacttctctttagaaaataaaccaataatttgatgttttgatgtattgactccacatatccagaaa |
38948063 |
T |
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| Q |
111 |
ttacactacaaacaaactaatactggtgaataaactgatatcatattatatttgttgacttatacaatatattttgnnnnnnntggatggtcttttgtgt |
210 |
Q |
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| T |
38948064 |
ttatactacaaacaaactaatactgatgaataaactgatatcatattatatttgttgacttatacaatccattttgaaaaaaatggatggtctttcgtgt |
38948163 |
T |
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| Q |
211 |
gtattgttttaggaataaagattggtttataactttaaaaataaataattggtttttctttaaaacatgaaaggaagttgaagt |
294 |
Q |
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| T |
38948164 |
gtattgtcttaggaataaagattggtttataactttaaaaataaataattggtttttctttaaaacatgaaaggaagttgaagt |
38948247 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 2006270 - 2006229
Alignment:
| Q |
18 |
ggatccacatagcttatattggggtcaattgaccccacttct |
59 |
Q |
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| T |
2006270 |
ggatctacatagttcatattggggtcaattgaccccacttct |
2006229 |
T |
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