View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_71 (Length: 308)
Name: NF3173_low_71
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 26026291 - 26026574
Alignment:
| Q |
9 |
gagaagaacgatggcattgacagaattagcactctatcaaattccttattgtgtcacattctctccttccttccgaccaaaacctccgttcatatgagct |
108 |
Q |
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| T |
26026291 |
gagaacaacgatggcattgacagaattagcactctatcaaattccttattgtgtcacattctctctttccttccgaccaaaacctccgttcatatgagct |
26026390 |
T |
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| Q |
109 |
tcgtctctcgcaaatggcgcaacctctggaagaatctcgaagtcttcgatttccgcgacaaatgcaatgaatacagctaccaagcccccgacgacgaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26026391 |
tcgtctctcgcaaatggcgcaacctctggaagaatctcgaagtcttcgatttccgcgacaaatgcaatgaatacagctaccaagcccccgacgacgaatt |
26026490 |
T |
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| Q |
209 |
caacgaacaattcatgctgttcaccgttttcgtcaacactgtcctctctctccgtcgctcacgcgtcgttcggaagttccgtct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26026491 |
caacgaacaattcatgctgttcaccgttttcgtcaacactgtcctctctctccgtcgctcacgcgtcgttcggaagttccgtct |
26026574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 24933438 - 24933717
Alignment:
| Q |
13 |
agaacgatggcattgacagaattagcactctatcaaattccttattgtgtcacattctctccttccttccgaccaaaacctccgttcatatgagcttcgt |
112 |
Q |
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| T |
24933438 |
agaacgaaggcattgacagactcaccactctaccaaattccttactatgtcacattctctccttcctccctaccaaaacctccgtcgacatgagcctcgt |
24933537 |
T |
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| Q |
113 |
ctctcgcaaatggcgcaacctctggaagaatctcgaagtcttcgatttccgcgacaaatgcaatgaatacagctaccaagcccccgacgacgaattcaac |
212 |
Q |
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| T |
24933538 |
ctctcgcaaatgccgccatctctggaagactctcgacgtcttcaatttccacgacaactgcgacgagtacacctaccaaggtccagacgacgaatacaac |
24933637 |
T |
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| Q |
213 |
gaacaattcatgctgttcaccgttttcgtcaacactgtcctctctctccgtcgctcacgcgtcgttcggaagttccgtct |
292 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
24933638 |
gaacaatttatgttgttcaccgttttcgtcaacactgtcctctctcttcgtcgctcacgcgtcattcggaagttccgtct |
24933717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 24529295 - 24529337
Alignment:
| Q |
228 |
ttcaccgttttcgtcaacactgtcctctctctccgtcgctcac |
270 |
Q |
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| T |
24529295 |
ttcaccgttttcgtcaacgctgtcctcgctctccgtagctcac |
24529337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 40585437 - 40585496
Alignment:
| Q |
109 |
tcgtctctcgcaaatggcgcaacctctggaagaatctcgaagtcttcgatttccgcgaca |
168 |
Q |
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| T |
40585437 |
tcgtttctcgcaaatggcgcaatctatggaagaatctcgaagccttggatttctgcgaca |
40585496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 40585530 - 40585611
Alignment:
| Q |
211 |
acgaacaattcatgctgttcaccgttttcgtcaacactgtcctctctctccgtcgctcacgcgtcgttcggaagttccgtct |
292 |
Q |
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||||||| ||| || | ||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||| |||| |
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| T |
40585530 |
acgaacagttcttgatcttctccgttttcgtcaacactgtcctcactctccgcaaatctcgcgttgttcggaagttctgtct |
40585611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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