View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_72 (Length: 308)
Name: NF3173_low_72
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 502040 - 501758
Alignment:
| Q |
11 |
cagagacgtgataaatgagta---tgcattagtcaaataataagaggtagactcttaaaacatgaccaatcaaaatttgaatttgaattgaaaaagtgac |
107 |
Q |
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| T |
502040 |
cagagacgtgataaatgagtacagtgcattagtcaaataataagaggtagactcttaaaacatgaccaatcaaaatttgaatttgaattgaaaaagtgac |
501941 |
T |
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| Q |
108 |
aaatatttagtgtggaataaatataggatgttttctttttccaataaagctaatatactacgcatgagaagcaccctcnnnnnnnnnnnnnnnnnnnnaa |
207 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
501940 |
aaatatttagcgtgggataaatatagtatgttttctttttccaataaagctaatatactacgcatgagaagcaccctcttttttcttttactttttttaa |
501841 |
T |
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| Q |
208 |
actgttttggttggaaagatatacatgtagaatataaatgcatcatgtagtaatcatgcctttaccgatttgcttatacatta |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
501840 |
actgttttggttggaaagatatacatgtagaatataaatgcatcatgtagtaatcatgcctttaccgatttgcttatacatta |
501758 |
T |
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