View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_75 (Length: 305)
Name: NF3173_low_75
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 6060780 - 6061055
Alignment:
| Q |
14 |
gagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacccgatgaagat |
113 |
Q |
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| T |
6060780 |
gagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacctgatgaagat |
6060879 |
T |
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| Q |
114 |
tatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataaccattttg |
213 |
Q |
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| T |
6060880 |
tatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataaccattttg |
6060979 |
T |
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| Q |
214 |
acttttgatgaatttgcatggagcaatcaggaatagaagaagtcgctgtaatctaggtgttcttgaagaatcaagt |
289 |
Q |
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| T |
6060980 |
acttttgatgaatttgcatggagcaaacaggaatagaagaagtcgctgtaatctaggtgttcttgaagaatcaagt |
6061055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 6047059 - 6047135
Alignment:
| Q |
123 |
gggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
199 |
Q |
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| T |
6047059 |
gggatctcagacatagaccttttatctgacaatgattatgactatgatgaattcttaggtgggagtgaattttctga |
6047135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 6043725 - 6043816
Alignment:
| Q |
105 |
gatgaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
199 |
Q |
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| T |
6043725 |
gatgaagactacccatctgggatctcagacatggatcttttatctgacgatgattatgaatatgacgaattctc---tgggagtgaattttctga |
6043816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 6132510 - 6132428
Alignment:
| Q |
14 |
gagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatg |
96 |
Q |
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| T |
6132510 |
gagatttatagaacaagtcaagtatttacggcttccatatgatgccactgatgattatccatttcaagcggcatttgattatg |
6132428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 6053730 - 6053829
Alignment:
| Q |
16 |
gatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagc---tgaatgtgattatggatcacccgatgaaga |
112 |
Q |
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| T |
6053730 |
gatgtaaagagcagatcaagtattttcggcttccacatgacgccactgatgactatccatttcaaacatctgaatgtgattatggatcacctgttgaaga |
6053829 |
T |
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