View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3173_low_80 (Length: 289)
Name: NF3173_low_80
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_80 |
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| [»] scaffold0576 (1 HSPs) |
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Alignment Details
Target: scaffold0576 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 4315 - 4049
Alignment:
| Q |
9 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcnnnnnnntaaatagaaatagtggtcaacttaaaagaggccaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4315 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcaaaaaaataaatagaaatagtggtcaacttaaaagaggccaaa |
4216 |
T |
|
| Q |
109 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215 |
gaccaatttcagctacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
4116 |
T |
|
| Q |
209 |
actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4115 |
actaattacaataagcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
4049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 28658411 - 28658145
Alignment:
| Q |
9 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcnnnnnnntaaatagaaatagtggtcaacttaaaagaggccaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28658411 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcaaaaaaataaatagaaatagtggtcaacttaaaagaggccaaa |
28658312 |
T |
|
| Q |
109 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28658311 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactaggttgatacatacttatcaattatcatcaaatttactgcag |
28658212 |
T |
|
| Q |
209 |
actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28658211 |
actaattacaataagcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
28658145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 20264579 - 20264313
Alignment:
| Q |
9 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcnnnnnnntaaatagaaatagtggtcaacttaaaagaggccaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20264579 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcaaaaaaataaatagaaatagtggtcaacttaaaagaggccaaa |
20264480 |
T |
|
| Q |
109 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20264479 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactaggttgatacatacttatcaattatcatcaaatttactgcag |
20264380 |
T |
|
| Q |
209 |
actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20264379 |
actaattacaataagcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
20264313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 3733864 - 3733598
Alignment:
| Q |
9 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcnnnnnnntaaatagaaatagtggtcaacttaaaagaggccaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
3733864 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcaaaaaaataaatagaaatagtggtcaacttaaaagaggccaaa |
3733765 |
T |
|
| Q |
109 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3733764 |
gaccaatttcagctacacatatgtaaactcactttctcctttgatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
3733665 |
T |
|
| Q |
209 |
actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3733664 |
actaattacaataagcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
3733598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 2752231 - 2752497
Alignment:
| Q |
9 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcnnnnnnntaaatagaaatagtggtcaacttaaaagaggccaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2752231 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcaaaaaaataaatagaaatagtggtcaacttaaaagaggccaaa |
2752330 |
T |
|
| Q |
109 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2752331 |
gaccaatttcagctacacatatgtaaactcactttctcctttgatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
2752430 |
T |
|
| Q |
209 |
actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2752431 |
actaattacaataagcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
2752497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 15359331 - 15359065
Alignment:
| Q |
9 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcnnnnnnntaaatagaaatagtggtcaacttaaaagaggccaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
15359331 |
caagaaaatatgaaaaaagacaaaagttagtcacctagagagagaggtcaacatctcaaaaaaataaatagaaatagtggtcaacttaaaagaggccaaa |
15359232 |
T |
|
| Q |
109 |
gaccaatttcagccacacatatgtaaactcactctctcctttaatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15359231 |
gaccaatttcagctacacatatgtaaactcactttctcctttgatttaaaagcttactagtttgatacatacttatcaattatcatcaaatttactgcag |
15359132 |
T |
|
| Q |
209 |
actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15359131 |
actaattacaataagcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaata |
15359065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 255
Target Start/End: Complemental strand, 30054135 - 30054039
Alignment:
| Q |
161 |
cttactagtttgatacatacttatcaattatcatcaaatttactgcag--actaattacaataatcaatgacaatttgcaggaaaaagaaaagaata |
255 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||||||| ||||| || ||| ||| ||||||||| |||| |
|
|
| T |
30054135 |
cttactagtttgatgcataattatcaattatcatcaaatttactgctgcaactaattacaataagcaatggcaggttgaagggaaaagaaaataata |
30054039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 30034442 - 30034346
Alignment:
| Q |
178 |
tacttatcaattatcatcaaatttactgcag--actaattacaataatcaatgacaatttgcaggaaaaagaaaagaataacattctaacctctccaa |
273 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||| ||||| |||| ||||| || ||| |||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
30034442 |
tacttatca-ttatcatcaaatttactgctgcaactgattaccataagcaatggcaggttgaaggaaaaagaaaagaatagcattataacctttccaa |
30034346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 34910241 - 34910179
Alignment:
| Q |
166 |
tagtttgatacatacttatcaattatcatcaaatttactgcagactaattacaataatcaatg |
228 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34910241 |
tagtttgaagcatacttatcaatcgtcattaaatttactgcagactaattacattaaccaatg |
34910179 |
T |
|
Back To:
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