View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3173_low_84 (Length: 274)
Name: NF3173_low_84
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3173_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 3304059 - 3303802
Alignment:
| Q |
11 |
cacagatcatgcattgaaggacggcgtaccattgagttggggaggtattttaattactcacaaatcctttaatttatataagctataattcgcaatccta |
110 |
Q |
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| T |
3304059 |
cacagatcatgcattgaaggacggcgtaccattgagttggggaggtattttaattactcacaaatcctttaatttatataagctataattcgcaacccta |
3303960 |
T |
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| Q |
111 |
tttaaatcttaactcgatcctatgtcacttgcgcgcatctatcaataaccactcttggttgtacatttctcttcttgaatagaacacttagccgca---- |
206 |
Q |
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| T |
3303959 |
tttaaatcttaactcgatcctatgtcacttgcgcgcatctatcaataaccactcttggttgtacatttctcttcttgaatagaacacttagccgcaatct |
3303860 |
T |
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| Q |
207 |
--------atctcttctagaaatgtataaacaggttcgtagtttgagatggagcattg |
256 |
Q |
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| T |
3303859 |
tagccgcaatctcttgtagaaatgtataaacaggttcgtagtttgagatggagcattg |
3303802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 32860227 - 32860366
Alignment:
| Q |
117 |
tcttaactcgatcctatgtcacttgcgcgcatctatcaataaccactcttggttgtacatttctcttcttgaatagaacacttagccgcaatctcttcta |
216 |
Q |
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|||||||| | |||||||| | |||| | ||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| | | ||||||| | |
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| T |
32860227 |
tcttaacttggtcctatgttatttgcatgaatctatcaataactactcttggttgtacagttctcttctttaatagaagacttaacttccatctcttaca |
32860326 |
T |
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| Q |
217 |
gaaatgtataaacaggttcgtagtttgagatggagcattg |
256 |
Q |
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| T |
32860327 |
gaaatgtattaacatgttcgtagttagggatagagcattg |
32860366 |
T |
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