View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_91 (Length: 264)

Name: NF3173_low_91
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_91
NF3173_low_91
[»] chr4 (8 HSPs)
chr4 (1-240)||(10395830-10396064)
chr4 (144-208)||(27272580-27272644)
chr4 (144-204)||(53469713-53469773)
chr4 (144-208)||(29235177-29235242)
chr4 (139-204)||(13816947-13817012)
chr4 (146-200)||(21206361-21206415)
chr4 (146-236)||(32015174-32015260)
chr4 (125-246)||(53472564-53472679)
[»] chr7 (4 HSPs)
chr7 (120-236)||(7961762-7961874)
chr7 (125-235)||(11269947-11270053)
chr7 (127-194)||(1103150-1103217)
chr7 (139-206)||(1716687-1716754)
[»] chr1 (5 HSPs)
chr1 (120-208)||(22827083-22827171)
chr1 (120-208)||(22840954-22841042)
chr1 (150-208)||(22826688-22826746)
chr1 (127-208)||(24284815-24284896)
chr1 (144-208)||(24272756-24272820)
[»] chr6 (12 HSPs)
chr6 (120-208)||(13558031-13558119)
chr6 (123-236)||(2921874-2921983)
chr6 (149-208)||(13556060-13556119)
chr6 (120-207)||(2923215-2923303)
chr6 (125-202)||(11678830-11678907)
chr6 (120-235)||(27340638-27340747)
chr6 (120-235)||(27401378-27401487)
chr6 (125-206)||(14721699-14721779)
chr6 (144-202)||(11677131-11677189)
chr6 (144-193)||(16403533-16403581)
chr6 (144-205)||(16910155-16910216)
chr6 (147-208)||(22880025-22880086)
[»] chr2 (5 HSPs)
chr2 (130-208)||(10128496-10128574)
chr2 (125-208)||(8761228-8761312)
chr2 (125-208)||(37965536-37965620)
chr2 (122-182)||(15140795-15140855)
chr2 (147-204)||(25550091-25550147)
[»] chr3 (3 HSPs)
chr3 (125-236)||(25889614-25889721)
chr3 (146-208)||(31141415-31141477)
chr3 (150-204)||(30046435-30046489)
[»] chr5 (4 HSPs)
chr5 (125-207)||(32796351-32796433)
chr5 (144-246)||(19670679-19670777)
chr5 (133-206)||(26896578-26896651)
chr5 (125-235)||(32795563-32795669)
[»] scaffold0007 (1 HSPs)
scaffold0007 (144-208)||(260221-260285)
[»] chr8 (1 HSPs)
chr8 (146-200)||(33897221-33897275)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10395830 - 10396064
Alignment:
Q  1 atttctcttggtgaaatgtgtcatacattccttgagattcatgatgtgagcccttgttttgcttgcatacannnnnnnatagtttcctaagcttgtttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||    
T  10395830 atttctcttggtgaaatgtgtcatacattccttgagattcatgatgtgagcccttgttttacttgcatacattttttgatagtttcctaagcttgtttga 10395929  T
Q  101 aactgttgaaatatgtcttgaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 200  Q
    ||||||| ||||||||||||||||||||| |||||  ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  10395930 aactgtt-aaatatgtcttgaattatgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtattt 10396028  T
Q  201 cttgcacccatatatagttagtgggttatgctatagatgg 240  Q
    ||||    |||  |||||||||||||||||||||||||||    
T  10396029 cttg----catcaatagttagtgggttatgctatagatgg 10396064  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 27272580 - 27272644
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  27272580 atgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 27272644  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 53469773 - 53469713
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 204  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  53469773 atgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 29235242 - 29235177
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagt-atttcttgcacc 208  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  29235242 atgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcacc 29235177  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 13816947 - 13817012
Alignment:
Q  139 agaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 204  Q
    |||| |||||||||||||| |||| |||||||||||||||||  |||| ||||||| |||||||||    
T  13816947 agaatatgaagaaatatgcgaagacttggtcatataaataaagaccttatgtgttattatttcttg 13817012  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 21206361 - 21206415
Alignment:
Q  146 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 200  Q
    |||||||||| |||||  ||||||||||||||||||||| ||||| |||||||||    
T  21206361 gaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtattt 21206415  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 32015174 - 32015260
Alignment:
Q  146 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgggttatgctatag 236  Q
    ||||| ||||||||||| ||||  | ||||||||| |  ||||||||||||||||||||||||     |||||||||||||| ||||||||    
T  32015174 gaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcacc----aatagttagtgggttttgctatag 32015260  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 53472679 - 53472564
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 224  Q
    |||| |||||| ||| || | ||||||||||||||||| |||  ||||||||||||||  ||||||||||||||||| ||||||     || ||||||||    
T  53472679 atgttccacatcggataatacgaagaaatatgcaaagacttgc-catataaataaaagt-ttgtgtgttagtatttcatgcacc----aatggttagtgg 53472586  T
Q  225 gttatgctatagatggcgttac 246  Q
    ||| |||||||| | |||||||    
T  53472585 gttttgctatagctagcgttac 53472564  T

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Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 7961762 - 7961874
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 219  Q
    |||||||||||||||| | | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  7961762 gaattatgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcacc----aatagtt 7961857  T
Q  220 agtgggttatgctatag 236  Q
    |||||||| ||||||||    
T  7961858 agtgggttttgctatag 7961874  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 11269947 - 11270053
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 224  Q
    ||||||||||| ||| || ||||||||||||  |||  |||||||||||||||||||||||||||||||||||||  |||||||     |||||||||||    
T  11269947 atgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcacc----aatagttagtgg 11270042  T
Q  225 gttatgctata 235  Q
    ||| |||||||    
T  11270043 gttttgctata 11270053  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 1103150 - 1103217
Alignment:
Q  127 gtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgtta 194  Q
    ||||||||| ||| || ||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  1103150 gtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 1716754 - 1716687
Alignment:
Q  139 agaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 206  Q
    |||| ||||| ||||||| ||||| |||  |||||||||||| | ||||||||||| |||||||||||    
T  1716754 agaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgca 1716687  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 22827171 - 22827083
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  22827171 gaattatgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcacc 22827083  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 22840954 - 22841042
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||||||| ||| || ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  22840954 gaattatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcacc 22841042  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 22826746 - 22826688
Alignment:
Q  150 aaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||| |||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcacc 22826688  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 24284815 - 24284896
Alignment:
Q  127 gtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||  ||||| ||||| ||||||||||| ||||||  ||||||||||| || |||||||||| |||||||||||||    
T  24284815 gtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcacc 24284896  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 24272756 - 24272820
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    ||||||||||||||||||| |||   ||||| ||||| |||||||||||||||||||||||||||    
T  24272756 atgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcacc 24272820  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 13558119 - 13558031
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||    
T  13558119 gaattatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcacc 13558031  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 2921983 - 2921874
Alignment:
Q  123 ttatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagt 222  Q
    ||||||| ||||| ||| || |||||||||||||||| || ||||| ||||||||||||| ||| |||||||||||||||||||||     |||||||||    
T  2921983 ttatgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcacc----aatagttagt 2921888  T
Q  223 gggttatgctatag 236  Q
    ||||| ||||||||    
T  2921887 gggttttgctatag 2921874  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 13556119 - 13556060
Alignment:
Q  149 gaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 13556060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 2923303 - 2923215
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaa-gatttggtcatataaataaaagccttgtgtgttagtatttcttgcac 207  Q
    ||||||| |||||||| ||| || ||||||||||||||||| |  ||||||||||||||||||| |||||||||||||| |||||||||    
T  2923303 gaattatttcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcac 2923215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 11678830 - 11678907
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttct 202  Q
    ||||||||||| ||| || ||||||||||||||||||  |||||||| |||||||||  |||||||||||||||||||    
T  11678830 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttct 11678907  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 27340747 - 27340638
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 219  Q
    |||| ||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||| |  ||||||||||||| ||||| |||     ||||||    
T  27340747 gaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtacc----aatagtt 27340654  T
Q  220 agtgggttatgctata 235  Q
    |||||||| |||||||    
T  27340653 agtgggttttgctata 27340638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 235
Target Start/End: Complemental strand, 27401487 - 27401378
Alignment:
Q  120 gaattatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagtt 219  Q
    |||| ||||||||||| ||| || ||||||||||||||||||  |||||||||||||||||| |  ||||||||||||| ||||| |||     ||||||    
T  27401487 gaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaaac--tgtgtgttagtatatcttgtacc----aatagtt 27401394  T
Q  220 agtgggttatgctata 235  Q
    |||||||| |||||||    
T  27401393 agtgggttttgctata 27401378  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 14721699 - 14721779
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 206  Q
    ||||||||||| |||||| |  ||||||||||||||||||||| | |||||||||||||||||| | | |||||||||||||    
T  14721699 atgtcccacatcggagaatagaaagaaatatgcaaagatttgg-cctataaataaaagccttgtttataagtatttcttgca 14721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 11677131 - 11677189
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttct 202  Q
    ||||||||||||||||||  ||| ||||||||||||||  |||||||||||||||||||    
T  11677131 atgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttct 11677189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 16403533 - 16403581
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgtt 193  Q
    |||||||||||||||| || || |||||||||||||||| ||||||||||    
T  16403533 atgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtt 16403581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 16910216 - 16910155
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgc 205  Q
    |||||| |||||||||||| ||||   ||||||||||||  |||||||||||||||| ||||    
T  16910216 atgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgc 16910155  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 22880086 - 22880025
Alignment:
Q  147 aagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||  ||| | ||||||||||||||||| |  |||||||||| |||||||||||||    
T  22880086 aagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcacc 22880025  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 10128496 - 10128574
Alignment:
Q  130 ccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||| |||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  10128496 ccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 10128574  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 8761312 - 8761228
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaaga-tttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||  || || ||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  8761312 atgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcacc 8761228  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 37965620 - 37965536
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaag-ccttgtgtgttagtatttcttgcacc 208  Q
    ||||| ||||| ||| || ||||||||||||||||||| ||||  ||||||||||||| | ||||||||||||||||||||||||    
T  37965620 atgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcacc 37965536  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 15140795 - 15140855
Alignment:
Q  122 attatgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaag 182  Q
    |||||||||||||| ||  || ||||||||||||| |||||||||||||||||||||||||    
T  15140795 attatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaag 15140855  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 25550091 - 25550147
Alignment:
Q  147 aagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 204  Q
    |||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtg-tagtatttcttg 25550147  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 25889614 - 25889721
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 224  Q
    ||||||||||| ||| || |||||||  ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||     |||||||||||    
T  25889614 atgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcacc----aatagttagtgg 25889709  T
Q  225 gttatgctatag 236  Q
    ||| ||||||||    
T  25889710 gttttgctatag 25889721  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 31141415 - 31141477
Alignment:
Q  146 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    |||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||    
T  31141415 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacacc 31141477  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 30046435 - 30046489
Alignment:
Q  150 aaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttg 204  Q
    ||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttg 30046489  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 32796433 - 32796351
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcac 207  Q
    |||||||| || ||| || ||||||||||||||||||  || ||||||||||||||||||||||||||||||||| |||||||    
T  32796433 atgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcac 32796351  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 19670679 - 19670777
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgggttatgctatagatggcgt 243  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||| |||| |||     |||||||||||||| |||||||| | ||||    
T  19670679 atgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtacc----aatagttagtgggttttgctatagctagcgt 19670774  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 26896578 - 26896651
Alignment:
Q  133 cattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgca 206  Q
    |||||||||| | ||||||||||||||||| |||| ||||||||||||  | ||||||||||||||||||||||    
T  26896578 cattggagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 32795669 - 32795563
Alignment:
Q  125 atgtcccacattggagaagatgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacccatatatagttagtgg 224  Q
    ||||||||||| ||| || ||||||||||||||||||| || ||||||| |||||||| |||| |||| |||||| |||| |||     |||||||||||    
T  32795669 atgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtacc----aatagttagtgg 32795574  T
Q  225 gttatgctata 235  Q
    ||| |||||||    
T  32795573 gttttgctata 32795563  T

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Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 260285 - 260221
Alignment:
Q  144 atgaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtatttcttgcacc 208  Q
    ||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||||    
T  260285 atgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcacc 260221  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 33897221 - 33897275
Alignment:
Q  146 gaagaaatatgcaaagatttggtcatataaataaaagccttgtgtgttagtattt 200  Q
    ||||||||||| |||||||||   ||||||||||||| |||||||||||||||||    
T  33897221 gaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattt 33897275  T

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