View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3173_low_94 (Length: 257)

Name: NF3173_low_94
Description: NF3173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3173_low_94
NF3173_low_94
[»] chr3 (3 HSPs)
chr3 (1-257)||(38180333-38180589)
chr3 (1-257)||(38185002-38185258)
chr3 (1-182)||(38170594-38170775)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 38180589 - 38180333
Alignment:
Q  1 acaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagta 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180589 acaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagta 38180490  T
Q  101 tgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38180489 tgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcatt 38180390  T
Q  201 ccttgggtcgcaaaggtggcacgtgagcttcatctcccatcagcgctattatggatt 257  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38180389 ccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggatt 38180333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 38185258 - 38185002
Alignment:
Q  1 acaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagta 100  Q
    ||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||   ||| ||||||||||||||||||||  || |||||  ||     
T  38185258 acaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacgaagacttcatcgcctacaggtc 38185159  T
Q  101 tgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcatt 200  Q
     ||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38185158 cgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcatt 38185059  T
Q  201 ccttgggtcgcaaaggtggcacgtgagcttcatctcccatcagcgctattatggatt 257  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38185058 ccttgggtcgcaaaggtggcacgtgagcttcacctcccatcagcgctattatggatt 38185002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 38170775 - 38170594
Alignment:
Q  1 acaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagta 100  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| |    || |||||||| | ||| |||||  ||     
T  38170775 acaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacgaagacatcgtctcctacatgtc 38170676  T
Q  101 tgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgctta 182  Q
    |||| ||| ||| ||| |||| |||||||||||||||||||| ||||||  |||||| |||  || ||||||||||||||||    
T  38170675 tgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttgctta 38170594  T

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