View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_high_12 (Length: 235)
Name: NF3174_high_12
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 44956054 - 44956286
Alignment:
| Q |
3 |
cctgttatgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagtttgttatgtaa |
102 |
Q |
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| T |
44956054 |
cctgttatgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagtttgttatgtaa |
44956153 |
T |
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| Q |
103 |
gaccaaatccatatgaagtgcacaagtgtgtaaataagtgacatatccattgatagaagttagtgcagtttatcgttttttaaattccatttcctaactg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44956154 |
gaccaaatccatatgaagtgcacaagtgtgtaaataagtgagatatccattgatagaagttagtgcagtttatcgttttttaaattccatttcctaactg |
44956253 |
T |
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| Q |
203 |
tttcacacttcctccatcaatttcaaaaatatt |
235 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44956254 |
tttcacacttcctccatcaatttcaaaaatatt |
44956286 |
T |
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