View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3174_high_2 (Length: 658)
Name: NF3174_high_2
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 20 - 651
Target Start/End: Complemental strand, 49631111 - 49630480
Alignment:
| Q |
20 |
ataattaatagagcttttaagtaacctgtaaaaactctgctcctggttcaagttcagaacttcggcttgcgaccatttgagaatcagacttgtaaatgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49631111 |
ataattaatagagcttttaagtaacctgtaaaaactctgctcctggttcaagttcagaacttcggcttgcgaccatatgagaatcagacttgtaaatgtt |
49631012 |
T |
|
| Q |
120 |
tctagccactgaaaagcttttcagaatgagttttcgcttctgctccagttcctcatttagctttgtggactttgggatcagtattgagctgctgagtttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49631011 |
tctagccactgaaaagcttttcagaatgagttttcgcttctgctccagttcctcatttagctttgtggactttgggatcagtattgagctgctgagtttt |
49630912 |
T |
|
| Q |
220 |
ttctcatacgcaatcacagccttcgcaaattcctatttcacaacaaccaacaaaaatccataatttgtattccttttatcaattttacatgcattgcaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49630911 |
ttctcatacgcaatcacagccttcgcaaattcctatttcacaacaaccaacaaaaatccataatttgtattccttttatcaattttacatgcattgcaaa |
49630812 |
T |
|
| Q |
320 |
aagtgtaggaacacaatgtatacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttcctcattctctctggatgaaattgaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49630811 |
aagtgtaggaacacaatgtatacctgataggccatactgcatccaggataatcaaattcatcactgtcttggttcctcattctctctggatgaaattgaa |
49630712 |
T |
|
| Q |
420 |
ggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctggagcaaatgccattggaacaaatctctc |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49630711 |
ggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctggagcaaatgccattggaacaaatctctc |
49630612 |
T |
|
| Q |
520 |
tgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtccttaaaccaatcatgcaaaggggtgttc |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49630611 |
tgcaagtctcttaacaccctgatggtggtaactattcaccatgatctgcattttgtcatctacaaaagagtccttaaaccaatcatgcaaaggggtgttt |
49630512 |
T |
|
| Q |
620 |
gccattacatatatcgaatgatgatgtccatc |
651 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
49630511 |
gccattacatatatcgaatgacgatgtccatc |
49630480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 392 - 612
Target Start/End: Original strand, 31651745 - 31651965
Alignment:
| Q |
392 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggatcgtaaaatccttcaaccaaaccatctg |
491 |
Q |
| |
|
|||||||| | ||| |||||||| || | |||||||||||||| |||||||| ||||| ||| || || || ||||| ||||||| ||||||||| | |
|
|
| T |
31651745 |
ttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
31651844 |
T |
|
| Q |
492 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcaccgtgatctgcattttgtcatctacaaaagagtc |
591 |
Q |
| |
|
||||||| |||||||||||||| | || |||||||||||||||||| ||||| || || ||||| ||| || | |||||| |||||| | ||||| || |
|
|
| T |
31651845 |
gagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatgatagctattaaccaaaatgtccattttatcatcttccaaagaatc |
31651944 |
T |
|
| Q |
592 |
cttaaaccaatcatgcaaagg |
612 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
31651945 |
cttaaaccaatgatgcaaagg |
31651965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University