View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_high_5 (Length: 336)
Name: NF3174_high_5
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 33855517 - 33855824
Alignment:
| Q |
10 |
aatacttaaattctttaggataaaatattactgtttgcaggtagtaggtaaatcatgatattattgtgtgtgaaagagaaagagagacgagggatgacaa |
109 |
Q |
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| T |
33855517 |
aatacttaaattctttaggacaaaatattactgtttgcaggtagtaggtaaatcatgatattattgtgtgtgaaagagaaagagagacgagggatgacaa |
33855616 |
T |
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| Q |
110 |
tttcctgcagtaaaaaatacatgccgttacacatagttttatatatcttgaccattaatccgagatcaggcaaatcagatgatataaacagtggattaat |
209 |
Q |
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| T |
33855617 |
tttcctgcagtaaaaaatacatgccgttacacatagttttatatatcttgaccattaatccgagatcaggcaaatcagatgatataaacagtggattaat |
33855716 |
T |
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| Q |
210 |
tattaatgatcacgacattgattttagatataactatatagatttatagatgtgtcatgtatttacaacaaagaatccaaatatgagatatggagctcat |
309 |
Q |
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| T |
33855717 |
tattaatgatcacgacattgattttagatataactatatagatttat-gacgtgtcatgcatttacaacaaagaatccaaatatgagatatggagctcat |
33855815 |
T |
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| Q |
310 |
gagtgatgt |
318 |
Q |
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| T |
33855816 |
gagtgatgt |
33855824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 60 - 318
Target Start/End: Original strand, 33866226 - 33866494
Alignment:
| Q |
60 |
aatcatgatattattgtgtgtgaaagagaaagagagacgagggatgacaatttcctgcagtaaaaaatacatgccgttacacatagttttatatatcttg |
159 |
Q |
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| T |
33866226 |
aatcatgatattattgtgtgtgaaagagaaagagagatgagggatgacaatttcctgcagtaaaaaatacgtgccgttacacatagttttatatatcttg |
33866325 |
T |
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| Q |
160 |
accattaatccgagatcaggcaaatcagatgatataaacagtggattaattattaatgatcacgacattgattttagatataactatatagatttataga |
259 |
Q |
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| T |
33866326 |
accattaatccaagatcaggcaattcagattatacaatcagtaaattaattattaatgatcacgacattgattttagatcgaactatttagatttaagtg |
33866425 |
T |
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| Q |
260 |
tgt----------gtcatgtatttacaacaaagaatccaaatatgagatatggagctcatgagtgatgt |
318 |
Q |
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| T |
33866426 |
tgtcatgcatgcactcatgcatttacaacaaagaacccaaatatgagagatggagcttatgagtgatgt |
33866494 |
T |
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