View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_high_6 (Length: 322)
Name: NF3174_high_6
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 103 - 306
Target Start/End: Complemental strand, 42187110 - 42186905
Alignment:
| Q |
103 |
tatgaattatgatgataatacctccgaattgcaagaatttaaaattgctggatcatataactatatggcgttggcatcttgactattatcttttccacct |
202 |
Q |
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| T |
42187110 |
tatgaattatgatgataatacctccgaattgcaagaatttaaaattgctggatcatataactatatggcgttggcatcttgactattatctcttccacct |
42187011 |
T |
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| Q |
203 |
tttgaagaacaccatcaaatcctttgataaggtttgtcagatcttgtacttacttctagtatgagaaactcagtacc--tataggcatgaatcatgatgt |
300 |
Q |
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| T |
42187010 |
tttgaagaactccatcaaatcctttgataaggtttgtcagatcttgtacttacttctagtatgagaaactcagtacctatataggcatgaatcatgatgt |
42186911 |
T |
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| Q |
301 |
caactg |
306 |
Q |
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| T |
42186910 |
caactg |
42186905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 42189860 - 42189770
Alignment:
| Q |
11 |
cacagaaattatgcaaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaataattaattccaaa |
101 |
Q |
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| T |
42189860 |
cacagaaattatgcaaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaaaaattaattccaaa |
42189770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 19533424 - 19533511
Alignment:
| Q |
14 |
agaaattatgcaaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaataattaattccaaa |
101 |
Q |
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| T |
19533424 |
agaaattatgcaaacagatcgacgatgagatgccttagatagttcatatatagagttcatcaaatcctgcaaaagaattaattccaaa |
19533511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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